Updated scripts and requirements for python3.12 upgrade #59
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…o packages that are compatible with 3.12 List of packages used (and old packages (commented out)) are listed below, with description of why some packages were removed or changed (if relevant): setuptools==70.0.0 numpy==1.26.4 imagecodecs==2024.9.22 # imagecodecs==2021.8.26 magicgui==0.9.1 # magicgui==0.5.1 matplotlib==3.9.0 # matplotlib==3.4.0 openpyxl==3.1.5 # openpyxl==3.0.9 pandas==2.2.3 # pandas==1.3.5 pillow==10.3.0 # Pillow==9.3.0 PySide6==6.7.3 # https://wiki.qt.io/Qt_for_Python # https://stackoverflow.com/questions/75707701/why-i-can-not-install-pyside2 # pyside2==5.15.2.1 # Unable to function in py3.12 with distutils removal/deprecation # pystackreg==0.2.7 # pystackreg==0.2.7 QtPy==2.4.1 # qtpy==2.1.0 scikit-image==0.23.2 # scikit-image==0.18.3 seaborn==0.13.2 # seaborn==0.12.0 tifffile==2024.5.22 # tifffile==2021.11.2 wxPython==4.2.2 # wxpython==4.1.1 xlrd==2.0.1 # xlrd==2.0.1
…/Adjustsigmoid/drawarrayofshapes Tests work with unittesting library and work fine; added some additional test cases. Tests read parameters from json configs
… closing, opening funcs
…with their configuration files and ground truth directories to reduce overcrowding in one dir for future test cases being added restructured project such that individual tests are located in their respective folder for tests of a given category.
…nt unable to be tested due to deprecation of pystackreg at time of commit
…and z series images separately
…saving output images
…tput instead of just filebasename
…shots for aivia15
…tardistForAivia works in testing on 2D images
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