updated FirstTimeSetup.py for python3.12 version, updated reqs file to packages that are compatible with 3.12

List of packages used (and old packages (commented out)) are listed below, with description of why some packages were removed or changed (if relevant):
setuptools==70.0.0
numpy==1.26.4
imagecodecs==2024.9.22
# imagecodecs==2021.8.26
magicgui==0.9.1
# magicgui==0.5.1
matplotlib==3.9.0
# matplotlib==3.4.0
openpyxl==3.1.5
# openpyxl==3.0.9
pandas==2.2.3
# pandas==1.3.5
pillow==10.3.0
# Pillow==9.3.0
PySide6==6.7.3
# https://wiki.qt.io/Qt_for_Python
# https://stackoverflow.com/questions/75707701/why-i-can-not-install-pyside2
# pyside2==5.15.2.1
# Unable to function in py3.12 with distutils removal/deprecation
# pystackreg==0.2.7
# pystackreg==0.2.7
QtPy==2.4.1
# qtpy==2.1.0
scikit-image==0.23.2
# scikit-image==0.18.3
seaborn==0.13.2
# seaborn==0.12.0
tifffile==2024.5.22
# tifffile==2021.11.2
wxPython==4.2.2
# wxpython==4.1.1
xlrd==2.0.1
# xlrd==2.0.1

Author: gsun1729

PythonEnvForAivia/FirstTimeSetup.py

@@ -28,10 +28,10 @@ def run(params):
         env_dir.mkdir(parents=False, exist_ok=True)
         subprocess.check_call([str(Path(sys.executable).parent / 'Scripts/virtualenv.exe'), f'{env_dir}'])
 
-        # copy essential python packages(python39.zip) to virtual environment
+        # copy essential python packages(python312.zip) to virtual environment
         # see https://github.com/pypa/virtualenv/issues/1185
-        if not os.path.exists(env_dir/'Scripts/python39.zip'):
-            copyfile(Path(sys.executable).parent / 'python39.zip', env_dir/'Scripts/python39.zip')
+        if not os.path.exists(env_dir/'Scripts/python312.zip'):
+            copyfile(Path(sys.executable).parent / 'python312.zip', env_dir/'Scripts/python312.zip')
 
         # install requirements
         mess = 'Python packages will now be installed. An internet connection is needed.\n\n' \
@@ -41,6 +41,8 @@ def run(params):
 
         pip_path = env_dir / 'Scripts' / 'pip.exe'
         requirement_dir = pathlib.Path(os.path.dirname(os.path.realpath(__file__)))
+        # subprocess.check_call(
+        #     [str(pip_path), 'install', 'setuptools==70.0.0'])
         subprocess.check_call(
             [str(pip_path), 'install', '-r', str(requirement_dir/'requirements.txt')])
 

PythonEnvForAivia/requirements.txt

@@ -1,15 +1,33 @@
-imagecodecs==2021.8.26
-magicgui==0.5.1
-matplotlib==3.4.0
-numpy==1.22.0
-openpyxl==3.0.9
-pandas==1.3.5
-Pillow==9.3.0
-pyside2==5.15.2.1
-pystackreg==0.2.7
-qtpy==2.1.0
-scikit-image==0.18.3
-seaborn==0.12.0
-tifffile==2021.11.2
-wxpython==4.1.1
+setuptools==70.0.0 
+numpy==1.26.4
+imagecodecs==2024.9.22
+# imagecodecs==2021.8.26
+magicgui==0.9.1 
+# magicgui==0.5.1
+matplotlib==3.9.0
+# matplotlib==3.4.0
+openpyxl==3.1.5 
+# openpyxl==3.0.9
+pandas==2.2.3 
+# pandas==1.3.5
+pillow==10.3.0
+# Pillow==9.3.0
+PySide6==6.7.3 
+# https://wiki.qt.io/Qt_for_Python
+# https://stackoverflow.com/questions/75707701/why-i-can-not-install-pyside2
+# pyside2==5.15.2.1
+# Unable to function in py3.12 with distutils removal/deprecation
+# pystackreg==0.2.7 
+# pystackreg==0.2.7
+QtPy==2.4.1 
+# qtpy==2.1.0
+scikit-image==0.23.2
+# scikit-image==0.18.3
+seaborn==0.13.2
+# seaborn==0.12.0
+tifffile==2024.5.22
+# tifffile==2021.11.2
+wxPython==4.2.2 
+# wxpython==4.1.1
 xlrd==2.0.1
+# xlrd==2.0.1