Kmeres v1.0

Kmeres - Identification of Centromeres and Telomeres using Kmer Profiles

Download and Compile:

$ git clone  https://github.com/wtsi-hpag/Kmeres.git 
$ cd kmeres 
$ ./make

Run the pipelines

Run kmeres:

       $ /nfs/users/nfs_z/zn1/src/kmeres/kmeres hash -kmer 31 -sample Human CHM13v2.fa meres.fa  > cover.out \
       
       Parameters:
         kmer:         Size of kmer word  [ default = 31 ]
         sample:       Sample name 
         CHM13v2.fa:   Input genome assembly file 
         meres.fa:     Output centromere sequence file 

Please contact Zemin Ning ( [email protected] ) for any further information.