fix the problem of parsing Ensembl GFF3 files

yjx1217 · Nov 12, 2021 · 303dc2f · 303dc2f
1 parent 212ea1f
commit 303dc2f
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/simuG.pl b/simuG.pl
@@ -938,7 +938,8 @@ sub parse_gff_file {
 		my ($mRNA_id, $gene_id) = ($attributes =~ /ID=([^;]+);\S*Parent=([^;]+)/);
 		$gff{$mRNA_id}{'parent'} = $gene_id;
 	    }
-	} elsif ($type eq 'exon') {
+	} 
+	if ($type eq 'exon') {
 	    my ($mRNA_id) = ($attributes =~ /Parent=([^;]+)/);
 	    my $exon_index = $start;
 	    $gff{$mRNA_id}{'exon'}{$exon_index}{'chr'} = $chr;