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LRSDAY v1.2.0
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@yjx1217 yjx1217 released this 15 Oct 15:18
· 24 commits to master since this release
v1.2.0
89976b0

[1.2.0] - 2018-10-15

Added

  • Support for adapter trimming for Nanopore reads (via Porechop).
  • Support for long-read filtering based on both quality and length (via Filtlong).
  • Support for long-read-based polishing for PacBio and Nanopore reads (via Quiver/Arrow for PacBio reads and nanopolish for Nanopore reads).
  • Support for the bax2bam format conversion for the PacBio RSII reads to make it compatible with PacBio's current SMRT pipeline.
  • Support for dedicated mitochondrial gene annotation (via Mfannot).

Changed

  • Treat nuclear genome and mitochondrial genome separately in the annotation phase.
  • Better robustness for various processing scripts.
  • Software version or downloading URL updates for a number of dependencies.

Fixed

  • Typos in the manual.
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