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@xjtu-omics

xjtu-omics

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  1. SVision Public

    Detecting genome structural variants with deep learning in single molecule sequencing

    Python 106 10

  2. ChineseQuartetGenome Public

    Genome assembly and variant benchmarks for Chinese Quartet

    Python 3

  3. msisensor-pro Public

    Microsatellite Instability (MSI) detection using high-throughput sequencing data.

    C++ 106 23

  4. Papaver-Genomics Public

    The genomic data for Papaver species

    Visual Basic 6.0 3 5

  5. msisensor-rna Public

    MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

    Python 21 2

  6. STMiner Public

    Python 13 5

Repositories

Showing 10 of 46 repositories
  • msisensor-rna Public

    MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

    Python 21 2 4 (1 issue needs help) 0 Updated Feb 28, 2025
  • msisensor-pro Public

    Microsatellite Instability (MSI) detection using high-throughput sequencing data.

    C++ 106 23 4 (1 issue needs help) 0 Updated Feb 28, 2025
  • SpaKnit Public

    SpaKnit is a multimodal integration framework for spatial multi-omics data.

    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Feb 27, 2025
  • STMiner Public
    Python 13 GPL-3.0 5 0 0 Updated Feb 26, 2025
  • LTR_Stream Public
    Python 1 AGPL-3.0 0 0 0 Updated Feb 13, 2025
  • Papaver-Genomics Public

    The genomic data for Papaver species

    Visual Basic 6.0 3 5 0 0 Updated Jan 12, 2025
  • SVision Public

    Detecting genome structural variants with deep learning in single molecule sequencing

    Python 106 GPL-3.0 10 17 0 Updated Dec 28, 2024
  • SVision-pro Public
    0 0 0 0 Updated Dec 28, 2024
  • HiCAT-human Public Forked from Ian916/HiCAT-human

    HiCAT-human

    Python 0 1 0 0 Updated Oct 31, 2024
  • cluster Public

    instruction of Ye-Lab HPC

    1 1 0 0 Updated Sep 24, 2024
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