MAFFT Module

This is the modified part of mafft modified by gitee@wym6912 / github@wym6912, which is a module of the other program. It has four subprograms: staralign, profilealign, profile_two_align and fragalign.

How to compile

1. Compile with multi-threading support in Linux/WSL (default): make -j16
2. Compile in Windows:
   • required: Visual Studio 2022
   • Open subwmsa.sln, then choose Build -> Build Solution.
   • Open x64\Debug folder, you will find five files: staralign.exe, profilealign.exe, fragalign.exe, profile_two_align.exe, and pthread.dll.
     • IMPORTANT: pthread.dll is necessary for other exe files.
     • Note: If you want to release this solution, please switch it to Release mode. Select Properties, choose Configuration Properties, then press Configuration Manager... button, change Active Solution configuration to Release.

How to use these programs

You can see *-command.txt for more infomation.