some bugs fixed etc

README.md

@@ -0,0 +1,7 @@
+# WRF-ARW Technical Documentation
+
+1. forked/[synced](https://github.com/KirstieJane/STEMMRoleModels/wiki/Syncing-your-fork-to-the-original-repository-via-the-browser) from [wrf-model/TechNote](https://github.com/wrf-model/TechNote)
+1. cloned into Overleaf for some [minor editing](https://github.com/jobonaf/WRF-ARW-TechNote/commits/master)
+1. from Overleaf: pushed back to this repository (in Overleaf dashboard: Menu > Sync > Github)
+1. from Overleaf: compiled, PDF downloaded
+1. PDF [published in figshare](https://ndownloader.figshare.com/files/13627070)

cover.tex

@@ -2,17 +2,17 @@
 \pagestyle{empty}
 %\begin{latexonly}
 \begin{center}
-\section*{ }
+%\section*{ }
 \begin{tabular}{lr|l}
-  &\textsf{NCAR/TN--475+STR}&\hspace{0.5cm}{       }\\
+%  &\textsf{NCAR/TN--475+STR}&\hspace{0.5cm}{       }\\
   &\textsf{\textbf{NCAR TECHNICAL NOTE}}&\\ \hline
-  &June 2008&\\[1cm]
+  &January 2019&\\[1cm]
 \multicolumn{2}{l|}
 {\LARGE \textsf{\textbf{A Description of the \hphantom{Advanced Research}}}}
 &\\ [5pt]
 
 \multicolumn{2}{l|}
-{\LARGE \textsf{\textbf{Advanced Research WRF Version 3}}}
+{\LARGE \textsf{\textbf{Advanced Research WRF Version 4}}}
 &\\[1cm]
 
 \normalsize

description.tex

@@ -16,18 +16,19 @@
 %\usepackage[square]{natbib}
 %
 % Use locally modified jgr bibliography style
-\bibliographystyle{jgr}
+%\bibliographystyle{jgr}
 %
 % Use changebar package for highlighting changes
 \usepackage{changebar}
 %
 % Use fancyheadings package for headers and footers 
-\usepackage{fancyheadings}
+\usepackage{fancyhdr}
+\usepackage[headheight=15pt]{geometry}
 \lhead[\wrf~Scientific Description]{\wrf~Scientific Description}
-\rhead[June 27, 2005]{June 27, 2005}
+\rhead[January 9, 2019]{January 9, 2019}
 % Use hyperref to insert links in pdf documents
-%\usepackage[colorlinks,citecolor=black,linkcolor=black,urlcolor=black]{hyperref}
-\usepackage[colorlinks,citecolor=blue,linkcolor=red,urlcolor=cyan]{hyperref}
+\usepackage[colorlinks,citecolor=black,linkcolor=black,urlcolor=black]{hyperref}
+%\usepackage[colorlinks,citecolor=blue,linkcolor=red,urlcolor=cyan]{hyperref}
 %
 %\usepackage{html}
 %\begin{htmlonly}
@@ -56,8 +57,8 @@
 \newcommand{\xmathbf}{\boldsymbol}
 
 \begin{document}
-\pagestyle{plain}
-%\pagestyle{fancy}
+%\pagestyle{plain}
+\pagestyle{fancy}
 
 % preliminary pages
 \include{cover}
@@ -94,6 +95,5 @@
 %
 % bibliography
 \addcontentsline{toc}{chapter}{\numberline{}References}
-\bibliography{description}
-
+\input{description.bbl}
 \end{document}

discretization.tex

@@ -566,9 +566,9 @@ \section{Spatial Discretization}
 %
 % Figure 3.something
 %
-\begin{figure}
-  \includegraphics *[width=6.5in,bb= 0 0 629.8 325.4]{figures/grids.pdf}
-  \caption{\label{figure:2}Horizontal and vertical grids of the ARW}
+\begin{figure}[ht]
+  \fbox{\includegraphics[trim=0 1cm 0 16cm, clip=true, width=6.5in]{figures/grids.pdf}}
+  \caption{\label{figure:2}Horizontal (left) and vertical (right) grids of the ARW}
 \end{figure}
 
 \subsection{Acoustic Step Equations}
@@ -1179,7 +1179,7 @@ \subsubsection{Positive-Definite Limiter for RK3 Advection}
 %  figure 3.2 for polar b.c
 %
 \begin{figure}
-  \includegraphics *[width=6.5in,bb= 0 0 419 183]{figures/polar_bc.pdf}
+  \includegraphics *[trim=0 0.1cm 0 0.1cm, clip=true, width=6.5in]{figures/polar_bc.pdf}
   \caption{\label{figure_pole} Latitude-longitude grid structure in the
 pole region. In the ARW formulation, $r_e\Delta\psi = \Delta y/m_y $.}
 \end{figure}
@@ -1498,7 +1498,7 @@ \subsection{Adaptive Time Step}
 \end{equation}
 \begin{equation}
 \Delta t = min ( max ( \Delta t, \Delta t_{min} ) , \Delta t_{max} ),
-\label{adapt_bound_min_timestep}
+\label{adapt_bound_timestep}
 \end{equation}
 %
 \noindent

equation.tex

@@ -28,7 +28,7 @@ \section{Vertical Coordinate and Flux-Form Variables}
 vertical coordinate. In previous versions of the ARW, $\eta$ was defined as
 %
 \begin{equation}
-\eta = {p_d-p_{t}\over p_{s}-p_{t}},
+\eta = {\frac{p_d-p_{t}}{p_{s}-p_{t}}},
 \label{eta_def}
 \end{equation}
 where $p_d$ is the hydrostatic component of the pressure of dry air, and
@@ -74,10 +74,10 @@ \section{Vertical Coordinate and Flux-Form Variables}
 such that
 %
 \begin{equation}
-c_1={2\eta_c^2\over(1-\eta_c)^3},  \quad      
-c_2={-\eta_c(4+\eta_c+\eta_c^2)\over(1-\eta_c)^3},  \quad      
-c_3={2(1+\eta_c+\eta_c^2)\over(1-\eta_c)^3},  \quad      
-c_4={-(1+\eta_c)\over\ \ \ (1-\eta_c)^3},    
+c_1={\frac{2\eta_c^2}{(1-\eta_c)^3}},  \quad      
+c_2={\frac{-\eta_c(4+\eta_c+\eta_c^2)}{(1-\eta_c)^3}},  \quad      
+c_3={\frac{2(1+\eta_c+\eta_c^2)}{(1-\eta_c)^3}},  \quad      
+c_4={\frac{-(1+\eta_c)}{(1-\eta_c)^3}},    
 \label{B_cof}
  \end{equation}
 where $\eta_c$ is a specified value of $\eta$ at which it becomes a pure pressure coordinate.%
@@ -95,7 +95,7 @@ \section{Vertical Coordinate and Flux-Form Variables}
 The vertical coordinate metric is defined as 
 %
 \begin{equation}
-\mu_d= {\partial p_d\over\partial\eta} = B_\eta(\eta)(p_s-p_t) +[1-B_\eta(\eta)](p_0-p_t). \label{mu_def}
+\mu_d= {\frac{\partial p_d}{\partial\eta}} = B_\eta(\eta)(p_s-p_t) +[1-B_\eta(\eta)](p_0-p_t). \label{mu_def}
 \end{equation}
 %
 Since $\mu_d \Delta\eta=\Delta p_d=-g\rho_d \Delta z$ is proportional to the mass per unit area within a
@@ -237,7 +237,7 @@ \section{Map Projections, Coriolis and Curvature Terms}
 in computational space to the corresponding distance on the earth's surface:
 
 \begin{equation}
-(m_x,m_y) = {(\Delta x, \Delta y) \over \hbox{distance on the earth}}.
+(m_x,m_y) = {\frac{(\Delta x, \Delta y)}{\hbox{distance on the earth}}}.
 \label{map_scale}
 \end{equation}
 %
@@ -323,19 +323,19 @@ \section{Map Projections, Coriolis and Curvature Terms}
 curvature terms are cast in the following form:
 
 \begin{align}
-F_{U_{cor}} & =  + {m_x\over m_y}
-\ \ \Bigl(f + u {\partial m_x \over
-\partial y} - v {\partial m_y \over \partial x}\Bigr) V
-- \Bigl( {u \over r_e}  + e \cos \alpha_r \Bigr)W \label{u-mom-rhs} 
+F_{U_{cor}} & =  + {\frac{m_x}{m_y}}
+\ \ \Bigl(f + u {\frac{\partial m_x}{\partial y}}
+- v {\frac{\partial m_y}{\partial x}}\Bigr) V
+- \Bigl( {\frac{u}{r_e}}  + e \cos \alpha_r \Bigr)W \label{u-mom-rhs} 
 \\
 %
-F_{V_{cor}} & = - {m_y\over m_x}\biggl[ \Bigl(f + u {\partial m_x \over
-\partial y} - v {\partial m_x \over \partial x}\Bigr) U
-+ \Bigl( {v \over r_e} -e \sin \alpha_r \Bigr)W \biggr] \label{v-mom-rhs} 
+F_{V_{cor}} & = - {\frac{m_y}{m_x}}\biggl[ \Bigl(f + u {\frac{\partial m_x}{\partial y}}
+- v {\frac{\partial m_x}{\partial x}}\Bigr) U
++ \Bigl( {\frac{v}{r_e}} -e \sin \alpha_r \Bigr)W \biggr] \label{v-mom-rhs} 
 \\
 %
-F_{W_{cor}} & = + e \Bigl(U \cos \alpha_r - {m_x\over m_y}V \sin \alpha_r\Bigr) 
-+ {1\over r_e}\biggl(uU +{m_x\over m_y}vV \biggr), \label{w-mom-rhs}
+F_{W_{cor}} & = + e \Bigl(U \cos \alpha_r - {\frac{m_x}{m_y}}V \sin \alpha_r\Bigr) 
++ {\frac{1}{r_e}}\biggl(uU +{\frac{m_x}{m_y}}vV \biggr), \label{w-mom-rhs}
 \end{align}
 \noindent
 where $\alpha_r$ is the local rotation angle between the $y$-axis and the