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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,270 @@ | ||
| absl-py==1.1.0 | ||
| accelerate==0.24.1 | ||
| aiohttp==3.8.3 | ||
| aiosignal==1.3.1 | ||
| alembic==1.11.0 | ||
| anndata==0.8.0 | ||
| antlr4-python3-runtime==4.9.3 | ||
| argcomplete==2.0.0 | ||
| argh==0.26.2 | ||
| arrow==1.2.2 | ||
| asciitree==0.3.3 | ||
| astunparse==1.6.3 | ||
| async-timeout==4.0.2 | ||
| attrs==21.4.0 | ||
| axial-positional-embedding==0.2.1 | ||
| banal==1.0.6 | ||
| beautifulsoup4==4.12.2 | ||
| binaryornot==0.4.4 | ||
| bio==1.3.9 | ||
| bioframe==0.7.2 | ||
| biopython==1.79 | ||
| biothings-client==0.2.6 | ||
| boto3==1.28.73 | ||
| botocore==1.31.73 | ||
| Brotli==1.1.0 | ||
| brotlipy @ file:///home/conda/feedstock_root/build_artifacts/brotlipy_1648854164373/work | ||
| cachetools==5.2.0 | ||
| catboost==1.1.1 | ||
| certifi==2022.12.7 | ||
| cffi @ file:///tmp/abs_98z5h56wf8/croots/recipe/cffi_1659598650955/work | ||
| chardet==4.0.0 | ||
| charset-normalizer @ file:///home/conda/feedstock_root/build_artifacts/charset-normalizer_1661170624537/work | ||
| click==8.1.3 | ||
| cmake==3.26.3 | ||
| colorama @ file:///home/conda/feedstock_root/build_artifacts/colorama_1666700638685/work | ||
| colorlog==6.6.0 | ||
| contourpy==1.0.6 | ||
| cookiecutter==2.1.1 | ||
| cryptography @ file:///home/conda/feedstock_root/build_artifacts/cryptography_1637687020823/work | ||
| cycler==0.11.0 | ||
| Cython==0.29.30 | ||
| dataset==1.6.0 | ||
| datasets==2.12.0 | ||
| deprecation==2.1.0 | ||
| dill==0.3.6 | ||
| dm-haiku==0.0.10 | ||
| docker-pycreds==0.4.0 | ||
| einops==0.8.0 | ||
| etils==0.8.0 | ||
| evoaug==1.0.6 | ||
| fasteners==0.19 | ||
| feather-format==0.4.1 | ||
| filelock==3.14.0 | ||
| fire==0.4.0 | ||
| flash-attn==1.0.9 | ||
| FLASH-pytorch==0.1.9 | ||
| flatbuffers==1.12 | ||
| flopth==0.1.5 | ||
| fonttools==4.38.0 | ||
| frozenlist==1.3.3 | ||
| fsspec==2024.6.0 | ||
| future @ file:///home/conda/feedstock_root/build_artifacts/future_1673596611778/work | ||
| gast==0.4.0 | ||
| gdown==4.7.1 | ||
| genomic-benchmarks==0.0.9 | ||
| gffutils==0.11.0 | ||
| gitdb==4.0.9 | ||
| GitPython==3.1.27 | ||
| google-auth==2.8.0 | ||
| google-auth-oauthlib==0.4.6 | ||
| google-pasta==0.2.0 | ||
| googleapis-common-protos==1.56.4 | ||
| gpn @ git+https://github.com/songlab-cal/gpn.git@05b23c54c572813810c094b31031901f7109575b | ||
| graphviz==0.20.1 | ||
| greenlet==2.0.2 | ||
| grpcio==1.46.3 | ||
| h2o @ file:///home/conda/feedstock_root/build_artifacts/h2o-py_1673012261920/work | ||
| h5py==3.7.0 | ||
| hickle==5.0.2 | ||
| huggingface-hub==0.18.0 | ||
| hydra-core==1.3.1 | ||
| idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1663625384323/work | ||
| importlib-metadata==4.11.4 | ||
| importlib-resources==5.9.0 | ||
| inflate64==1.0.0 | ||
| jax==0.4.19 | ||
| jaxlib==0.4.19+cuda11.cudnn86 | ||
| Jinja2==3.1.4 | ||
| jinja2-time==0.2.0 | ||
| jmespath==1.0.1 | ||
| jmp==0.0.4 | ||
| joblib==1.3.2 | ||
| keras==2.9.0 | ||
| Keras-Preprocessing==1.1.2 | ||
| kipoi==0.8.5 | ||
| kipoi-conda==0.3.1 | ||
| kipoi-utils==0.7.6 | ||
| kipoiseq==0.7.1 | ||
| kiwisolver==1.4.4 | ||
| libclang==14.0.1 | ||
| lightgbm==3.3.5 | ||
| lightning-utilities==0.6.0.post0 | ||
| linformer==0.2.1 | ||
| lit==16.0.5 | ||
| llvmlite==0.39.1 | ||
| local-attention==1.4.4 | ||
| Mako==1.2.4 | ||
| mamba-ssm==2.0.3 | ||
| Markdown==3.3.7 | ||
| MarkupSafe==2.1.5 | ||
| matplotlib==3.6.2 | ||
| Mega-pytorch==0.0.15 | ||
| ml-dtypes==0.3.1 | ||
| mpmath==1.3.0 | ||
| multidict==6.0.4 | ||
| multiprocess==0.70.14 | ||
| multivolumefile==0.2.3 | ||
| mygene==3.2.2 | ||
| natsort==8.1.0 | ||
| ncls==0.0.65 | ||
| networkx==3.2.1 | ||
| ninja==1.11.1 | ||
| nucleotide-transformer @ file:///cluster/home/tonyu/VE_Pretraining/nucleotide-transformer | ||
| numba==0.56.4 | ||
| numcodecs==0.12.1 | ||
| numpy==1.23.5 | ||
| nvidia-cublas-cu11==11.10.3.66 | ||
| nvidia-cublas-cu12==12.1.3.1 | ||
| nvidia-cuda-cupti-cu11==11.7.101 | ||
| nvidia-cuda-cupti-cu12==12.1.105 | ||
| nvidia-cuda-nvcc-cu11==11.8.89 | ||
| nvidia-cuda-nvrtc-cu11==11.7.99 | ||
| nvidia-cuda-nvrtc-cu12==12.1.105 | ||
| nvidia-cuda-runtime-cu11==11.7.99 | ||
| nvidia-cuda-runtime-cu12==12.1.105 | ||
| nvidia-cudnn-cu11==8.5.0.96 | ||
| nvidia-cudnn-cu12==8.9.2.26 | ||
| nvidia-cufft-cu11==10.9.0.58 | ||
| nvidia-cufft-cu12==11.0.2.54 | ||
| nvidia-curand-cu11==10.2.10.91 | ||
| nvidia-curand-cu12==10.3.2.106 | ||
| nvidia-cusolver-cu11==11.4.0.1 | ||
| nvidia-cusolver-cu12==11.4.5.107 | ||
| nvidia-cusparse-cu11==11.7.4.91 | ||
| nvidia-cusparse-cu12==12.1.0.106 | ||
| nvidia-nccl-cu11==2.14.3 | ||
| nvidia-nccl-cu12==2.20.5 | ||
| nvidia-nvjitlink-cu12==12.5.40 | ||
| nvidia-nvtx-cu11==11.7.91 | ||
| nvidia-nvtx-cu12==12.1.105 | ||
| nystrom-attention==0.0.11 | ||
| oauthlib==3.2.0 | ||
| omegaconf==2.3.0 | ||
| opt-einsum==3.3.0 | ||
| packaging==21.3 | ||
| pandarallel==1.6.5 | ||
| pandas==1.4.2 | ||
| pathtools==0.1.2 | ||
| patsy==0.5.3 | ||
| peft==0.6.1 | ||
| performer-pytorch==1.1.4 | ||
| Pillow==9.1.1 | ||
| plotly==5.13.1 | ||
| product-key-memory==0.1.10 | ||
| promise==2.3 | ||
| protobuf==3.20.1 | ||
| psutil==5.9.1 | ||
| ptflops==0.7.1.2 | ||
| ptwt==0.1.9 | ||
| py7zr==0.21.0 | ||
| pyarrow==12.0.0 | ||
| pyasn1==0.4.8 | ||
| pyasn1-modules==0.2.8 | ||
| pybcj==1.0.2 | ||
| pyBigWig==0.3.23 | ||
| pycox==0.2.3 | ||
| pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1636257122734/work | ||
| pycryptodomex==3.20.0 | ||
| pyfaidx==0.7.0 | ||
| pynndescent==0.5.8 | ||
| pyOpenSSL @ file:///home/conda/feedstock_root/build_artifacts/pyopenssl_1608055815057/work | ||
| pyparsing==3.0.9 | ||
| pyppmd==1.1.0 | ||
| pyranges==0.0.117 | ||
| pyrle==0.0.35 | ||
| pysam==0.21.0 | ||
| PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1648857263093/work | ||
| python-dateutil==2.8.2 | ||
| python-slugify==6.1.2 | ||
| pytorch-fast-transformers==0.4.0 | ||
| pytorch-lightning==1.9.0 | ||
| pytorch-metric-learning==2.6.0 | ||
| pytorch-tabnet==4.0 | ||
| pytz==2022.1 | ||
| PyWavelets==1.6.0 | ||
| PyYAML==6.0 | ||
| pyzstd==0.16.0 | ||
| reformer-pytorch==1.4.4 | ||
| regex==2022.10.31 | ||
| related==0.7.2 | ||
| requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1673863902341/work | ||
| requests-oauthlib==1.3.1 | ||
| responses==0.18.0 | ||
| rotary-embedding-torch==0.3.3 | ||
| rsa==4.8 | ||
| s3transfer==0.7.0 | ||
| safetensors==0.4.0 | ||
| scanpy==1.9.1 | ||
| scikit-learn==1.1.1 | ||
| scipy==1.11.3 | ||
| seaborn==0.12.1 | ||
| sentry-sdk==1.5.12 | ||
| session-info==1.0.0 | ||
| setproctitle==1.2.3 | ||
| shortuuid==1.0.9 | ||
| simplejson==3.17.6 | ||
| six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work | ||
| sklearn==0.0 | ||
| smmap==5.0.0 | ||
| sorted-nearest==0.0.37 | ||
| soupsieve==2.4.1 | ||
| sparsemax==0.1.9 | ||
| SQLAlchemy==1.4.48 | ||
| statsmodels==0.13.5 | ||
| stdlib-list==0.8.0 | ||
| sympy==1.12.1 | ||
| tabulate @ file:///home/conda/feedstock_root/build_artifacts/tabulate_1665138452165/work | ||
| tenacity==8.2.2 | ||
| tensorboard==2.9.1 | ||
| tensorboard-data-server==0.6.1 | ||
| tensorboard-plugin-wit==1.8.1 | ||
| tensorflow==2.9.1 | ||
| tensorflow-datasets==4.6.0 | ||
| tensorflow-estimator==2.9.0 | ||
| tensorflow-hub==0.13.0 | ||
| tensorflow-io-gcs-filesystem==0.26.0 | ||
| tensorflow-metadata==1.10.0 | ||
| tensorly==0.8.0 | ||
| termcolor==1.1.0 | ||
| text-unidecode==1.3 | ||
| texttable==1.7.0 | ||
| threadpoolctl==3.1.0 | ||
| timm==0.6.12 | ||
| tinydb==4.7.0 | ||
| tokenizers==0.13.2 | ||
| toml==0.10.2 | ||
| torch==2.3.1 | ||
| torchaudio==0.13.1 | ||
| torchdata==0.6.1 | ||
| torcheval==0.0.7 | ||
| torchinfo==1.8.0 | ||
| torchmetrics==0.11.0 | ||
| torchtext==0.15.2 | ||
| torchtuples==0.2.2 | ||
| torchvision==0.14.1 | ||
| tqdm==4.64.0 | ||
| transformers==4.29.2 | ||
| triton==2.3.1 | ||
| typing_extensions==4.12.2 | ||
| umap-learn==0.5.3 | ||
| urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1673452138552/work | ||
| wandb==0.13.0 | ||
| Werkzeug==2.1.2 | ||
| wrapt==1.14.1 | ||
| xgboost==1.7.4 | ||
| xxhash==3.2.0 | ||
| yarl==1.8.2 | ||
| zarr==2.18.2 | ||
| zipp==3.8.0 | ||
| zstandard==0.23.0 |