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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,293 @@ | ||
| name: monica | ||
| channels: | ||
| - conda-forge | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=main | ||
| - _openmp_mutex=5.1=1_gnu | ||
| - brotlipy=0.7.0=py39hb9d737c_1004 | ||
| - ca-certificates=2022.12.7=ha878542_0 | ||
| - certifi=2022.12.7=pyhd8ed1ab_0 | ||
| - cffi=1.15.1=py39h74dc2b5_0 | ||
| - colorama=0.4.6=pyhd8ed1ab_0 | ||
| - cryptography=3.4.8=py39h95dcef6_1 | ||
| - h2o-py=3.38.0.4=pyhd8ed1ab_0 | ||
| - ld_impl_linux-64=2.38=h1181459_1 | ||
| - libblas=3.9.0=15_linux64_openblas | ||
| - libcblas=3.9.0=15_linux64_openblas | ||
| - libffi=3.3=he6710b0_2 | ||
| - libgcc-ng=11.2.0=h1234567_1 | ||
| - libgfortran-ng=12.2.0=h69a702a_19 | ||
| - libgfortran5=12.2.0=h337968e_19 | ||
| - libgomp=11.2.0=h1234567_1 | ||
| - liblapack=3.9.0=15_linux64_openblas | ||
| - libopenblas=0.3.20=pthreads_h78a6416_0 | ||
| - libstdcxx-ng=11.2.0=h1234567_1 | ||
| - ncurses=6.3=h7f8727e_2 | ||
| - openjdk=8.0.332=h166bdaf_0 | ||
| - openssl=1.1.1t=h7f8727e_0 | ||
| - pip=21.2.4=py39h06a4308_0 | ||
| - pycparser=2.21=pyhd8ed1ab_0 | ||
| - pyopenssl=20.0.1=pyhd8ed1ab_0 | ||
| - pysocks=1.7.1=py39hf3d152e_5 | ||
| - python=3.9.12=h12debd9_1 | ||
| - python_abi=3.9=2_cp39 | ||
| - readline=8.1.2=h7f8727e_1 | ||
| - setuptools=61.2.0=py39h06a4308_0 | ||
| - six=1.16.0=pyh6c4a22f_0 | ||
| - sqlite=3.38.3=hc218d9a_0 | ||
| - tk=8.6.12=h1ccaba5_0 | ||
| - tzdata=2022a=hda174b7_0 | ||
| - wheel=0.37.1=pyhd3eb1b0_0 | ||
| - xz=5.2.5=h7f8727e_1 | ||
| - zlib=1.2.12=h7f8727e_2 | ||
| - pip: | ||
| - absl-py==1.1.0 | ||
| - accelerate==0.24.1 | ||
| - aiohttp==3.8.3 | ||
| - aiosignal==1.3.1 | ||
| - alembic==1.11.0 | ||
| - anndata==0.8.0 | ||
| - antlr4-python3-runtime==4.9.3 | ||
| - argcomplete==2.0.0 | ||
| - argh==0.26.2 | ||
| - arrow==1.2.2 | ||
| - asciitree==0.3.3 | ||
| - astunparse==1.6.3 | ||
| - async-timeout==4.0.2 | ||
| - attrs==21.4.0 | ||
| - axial-positional-embedding==0.2.1 | ||
| - banal==1.0.6 | ||
| - beautifulsoup4==4.12.2 | ||
| - binaryornot==0.4.4 | ||
| - bio==1.3.9 | ||
| - bioframe==0.7.2 | ||
| - biopython==1.79 | ||
| - biothings-client==0.2.6 | ||
| - boto3==1.28.73 | ||
| - botocore==1.31.73 | ||
| - brotli==1.1.0 | ||
| - cachetools==5.2.0 | ||
| - catboost==1.1.1 | ||
| - chardet==4.0.0 | ||
| - charset-normalizer==2.0.12 | ||
| - click==8.1.3 | ||
| - cmake==3.26.3 | ||
| - colorlog==6.6.0 | ||
| - contourpy==1.0.6 | ||
| - cookiecutter==2.1.1 | ||
| - cycler==0.11.0 | ||
| - cython==0.29.30 | ||
| - dataset==1.6.0 | ||
| - datasets==2.12.0 | ||
| - deprecation==2.1.0 | ||
| - dill==0.3.6 | ||
| - dm-haiku==0.0.10 | ||
| - docker-pycreds==0.4.0 | ||
| - einops==0.6.0 | ||
| - etils==0.8.0 | ||
| - evoaug==1.0.6 | ||
| - fasteners==0.19 | ||
| - feather-format==0.4.1 | ||
| - filelock==3.8.2 | ||
| - fire==0.4.0 | ||
| - flash-attn==1.0.9 | ||
| - flash-pytorch==0.1.9 | ||
| - flatbuffers==1.12 | ||
| - flopth==0.1.5 | ||
| - fonttools==4.38.0 | ||
| - frozenlist==1.3.3 | ||
| - fsspec==2023.10.0 | ||
| - future==0.18.2 | ||
| - gast==0.4.0 | ||
| - gdown==4.7.1 | ||
| - genomic-benchmarks==0.0.9 | ||
| - gffutils==0.11.0 | ||
| - gitdb==4.0.9 | ||
| - gitpython==3.1.27 | ||
| - google-auth==2.8.0 | ||
| - google-auth-oauthlib==0.4.6 | ||
| - google-pasta==0.2.0 | ||
| - googleapis-common-protos==1.56.4 | ||
| - gpn==0.5 | ||
| - greenlet==2.0.2 | ||
| - grpcio==1.46.3 | ||
| - h5py==3.7.0 | ||
| - hickle==5.0.2 | ||
| - huggingface-hub==0.18.0 | ||
| - hydra-core==1.3.1 | ||
| - idna==3.3 | ||
| - importlib-metadata==4.11.4 | ||
| - importlib-resources==5.9.0 | ||
| - inflate64==1.0.0 | ||
| - jax==0.4.19 | ||
| - jaxlib==0.4.19+cuda11.cudnn86 | ||
| - jinja2==3.1.2 | ||
| - jinja2-time==0.2.0 | ||
| - jmespath==1.0.1 | ||
| - jmp==0.0.4 | ||
| - joblib==1.3.2 | ||
| - keras==2.9.0 | ||
| - keras-preprocessing==1.1.2 | ||
| - kipoi==0.8.5 | ||
| - kipoi-conda==0.3.1 | ||
| - kipoi-utils==0.7.6 | ||
| - kipoiseq==0.7.1 | ||
| - kiwisolver==1.4.4 | ||
| - libclang==14.0.1 | ||
| - lightgbm==3.3.5 | ||
| - lightning-utilities==0.6.0.post0 | ||
| - linformer==0.2.1 | ||
| - lit==16.0.5 | ||
| - llvmlite==0.39.1 | ||
| - local-attention==1.4.4 | ||
| - mako==1.2.4 | ||
| - mamba-ssm==2.0.3 | ||
| - markdown==3.3.7 | ||
| - markupsafe==2.1.1 | ||
| - matplotlib==3.6.2 | ||
| - mega-pytorch==0.0.15 | ||
| - ml-dtypes==0.3.1 | ||
| - mpmath==1.3.0 | ||
| - multidict==6.0.4 | ||
| - multiprocess==0.70.14 | ||
| - multivolumefile==0.2.3 | ||
| - mygene==3.2.2 | ||
| - natsort==8.1.0 | ||
| - ncls==0.0.65 | ||
| - networkx==2.8.8 | ||
| - ninja==1.11.1 | ||
| - nucleotide-transformer==0.0.1 | ||
| - numba==0.56.4 | ||
| - numcodecs==0.12.1 | ||
| - numpy==1.23.5 | ||
| - nvidia-cublas-cu11==11.10.3.66 | ||
| - nvidia-cuda-cupti-cu11==11.7.101 | ||
| - nvidia-cuda-nvcc-cu11==11.8.89 | ||
| - nvidia-cuda-nvrtc-cu11==11.7.99 | ||
| - nvidia-cuda-runtime-cu11==11.7.99 | ||
| - nvidia-cudnn-cu11==8.5.0.96 | ||
| - nvidia-cufft-cu11==10.9.0.58 | ||
| - nvidia-curand-cu11==10.2.10.91 | ||
| - nvidia-cusolver-cu11==11.4.0.1 | ||
| - nvidia-cusparse-cu11==11.7.4.91 | ||
| - nvidia-nccl-cu11==2.14.3 | ||
| - nvidia-nvtx-cu11==11.7.91 | ||
| - nystrom-attention==0.0.11 | ||
| - oauthlib==3.2.0 | ||
| - omegaconf==2.3.0 | ||
| - opt-einsum==3.3.0 | ||
| - packaging==21.3 | ||
| - pandarallel==1.6.5 | ||
| - pandas==1.4.2 | ||
| - pathtools==0.1.2 | ||
| - patsy==0.5.3 | ||
| - peft==0.6.1 | ||
| - performer-pytorch==1.1.4 | ||
| - pillow==9.1.1 | ||
| - plotly==5.13.1 | ||
| - product-key-memory==0.1.10 | ||
| - promise==2.3 | ||
| - protobuf==3.20.1 | ||
| - psutil==5.9.1 | ||
| - ptflops==0.7.1.2 | ||
| - ptwt==0.1.9 | ||
| - py7zr==0.21.0 | ||
| - pyarrow==12.0.0 | ||
| - pyasn1==0.4.8 | ||
| - pyasn1-modules==0.2.8 | ||
| - pybcj==1.0.2 | ||
| - pybigwig==0.3.23 | ||
| - pycox==0.2.3 | ||
| - pycryptodomex==3.20.0 | ||
| - pyfaidx==0.7.0 | ||
| - pynndescent==0.5.8 | ||
| - pyparsing==3.0.9 | ||
| - pyppmd==1.1.0 | ||
| - pyranges==0.0.117 | ||
| - pyrle==0.0.35 | ||
| - pysam==0.21.0 | ||
| - python-dateutil==2.8.2 | ||
| - python-graphviz==0.20.1 | ||
| - python-slugify==6.1.2 | ||
| - pytorch-fast-transformers==0.4.0 | ||
| - pytorch-lightning==1.9.0 | ||
| - pytorch-metric-learning==2.6.0 | ||
| - pytorch-tabnet==4.0 | ||
| - pytz==2022.1 | ||
| - pywavelets==1.6.0 | ||
| - pyyaml==6.0 | ||
| - pyzstd==0.16.0 | ||
| - reformer-pytorch==1.4.4 | ||
| - regex==2022.10.31 | ||
| - related==0.7.2 | ||
| - requests==2.28.0 | ||
| - requests-oauthlib==1.3.1 | ||
| - responses==0.18.0 | ||
| - rotary-embedding-torch==0.3.3 | ||
| - rsa==4.8 | ||
| - s3transfer==0.7.0 | ||
| - safetensors==0.4.0 | ||
| - scanpy==1.9.1 | ||
| - scikit-learn==1.1.1 | ||
| - scipy==1.11.3 | ||
| - seaborn==0.12.1 | ||
| - sentry-sdk==1.5.12 | ||
| - session-info==1.0.0 | ||
| - setproctitle==1.2.3 | ||
| - shortuuid==1.0.9 | ||
| - simplejson==3.17.6 | ||
| - sklearn==0.0 | ||
| - smmap==5.0.0 | ||
| - sorted-nearest==0.0.37 | ||
| - soupsieve==2.4.1 | ||
| - sparsemax==0.1.9 | ||
| - sqlalchemy==1.4.48 | ||
| - statsmodels==0.13.5 | ||
| - stdlib-list==0.8.0 | ||
| - sympy==1.12 | ||
| - tabulate==0.8.9 | ||
| - tenacity==8.2.2 | ||
| - tensorboard==2.9.1 | ||
| - tensorboard-data-server==0.6.1 | ||
| - tensorboard-plugin-wit==1.8.1 | ||
| - tensorflow==2.9.1 | ||
| - tensorflow-datasets==4.6.0 | ||
| - tensorflow-estimator==2.9.0 | ||
| - tensorflow-hub==0.13.0 | ||
| - tensorflow-io-gcs-filesystem==0.26.0 | ||
| - tensorflow-metadata==1.10.0 | ||
| - tensorly==0.8.0 | ||
| - termcolor==1.1.0 | ||
| - text-unidecode==1.3 | ||
| - texttable==1.7.0 | ||
| - threadpoolctl==3.1.0 | ||
| - timm==0.6.12 | ||
| - tinydb==4.7.0 | ||
| - tokenizers==0.13.2 | ||
| - toml==0.10.2 | ||
| - torch==1.13.1 | ||
| - torchaudio==0.13.1 | ||
| - torchdata==0.6.1 | ||
| - torcheval==0.0.7 | ||
| - torchinfo==1.8.0 | ||
| - torchmetrics==0.11.0 | ||
| - torchtext==0.15.2 | ||
| - torchtuples==0.2.2 | ||
| - torchvision==0.14.1 | ||
| - tqdm==4.64.0 | ||
| - transformers==4.29.2 | ||
| - triton==2.0.0 | ||
| - typing-extensions==4.2.0 | ||
| - umap-learn==0.5.3 | ||
| - urllib3==1.26.9 | ||
| - wandb==0.13.0 | ||
| - werkzeug==2.1.2 | ||
| - wrapt==1.14.1 | ||
| - xgboost==1.7.4 | ||
| - xxhash==3.2.0 | ||
| - yarl==1.8.2 | ||
| - zarr==2.18.2 | ||
| - zipp==3.8.0 | ||
| - zstandard==0.23.0 | ||
| prefix: /cluster/home/tonyu/.conda/envs/monica |