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Sometime you can have an extra image cytassist_image.tiff if you use Cytassist to transfer transcriptomic probes from standard glass slides to Visium slides.
I think the scale factor related to this image is regist_target_img_scalef.
You do a grep and filter based on accepted list of keyword to find the good image and associate scalefactor.
Could be upgraded to add support for this Cytassist image which I stil don't know is considered for the full res image or not but that is another consideration.
The text was updated successfully, but these errors were encountered:
Sometime you can have an extra image
cytassist_image.tiff
if you use Cytassist to transfer transcriptomic probes from standard glass slides to Visium slides.I think the scale factor related to this image is regist_target_img_scalef.
scalefactors_json.json
{"regist_target_img_scalef
": 0.17107664, "tissue_hires_scalef": 0.057025548, "tissue_lowres_scalef": 0.017107664, "fiducial_diameter_fullres": 322.2879096308676, "spot_diameter_fullres": 214.85861109947552}You do a grep and filter based on accepted list of keyword to find the good image and associate scalefactor.
Could be upgraded to add support for this Cytassist image which I stil don't know is considered for the full res image or not but that is another consideration.
The text was updated successfully, but these errors were encountered: