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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 72 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 143 32

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 43 9

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    PHP 8 7

Repositories

Showing 10 of 113 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 3 4 4 0 Updated Nov 19, 2025
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 3 0 5 (2 issues need help) 0 Updated Nov 19, 2025
  • czieoss6-biocgpu Public

    Website tracking repositories related to czieoss6-biocgpu

    waldronlab/czieoss6-biocgpu’s past year of commit activity
    0 0 0 0 Updated Nov 18, 2025
  • bioanalyzer-backend Public

    Streamline BugSigDB curation with AI-powered scientific paper analysis. Automatically extracts essential microbiome study metadata from research papers, reducing manual curation time and improving data quality for the BugSigDB database.

    waldronlab/bioanalyzer-backend’s past year of commit activity
    Python 0 0 10 0 Updated Nov 18, 2025
  • ImageFeatureTCGA Public
    waldronlab/ImageFeatureTCGA’s past year of commit activity
    R 0 1 8 0 Updated Nov 18, 2025
  • TCGAutils Public

    Toolbox package for organizing and working with TCGA data

    waldronlab/TCGAutils’s past year of commit activity
    R 28 7 1 0 Updated Nov 18, 2025
  • cheatsheets Public

    WaldronLab Cheat Sheets

    waldronlab/cheatsheets’s past year of commit activity
    1 MIT 0 0 0 Updated Nov 18, 2025
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 61 6 7 1 Updated Nov 17, 2025
  • curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    waldronlab/curatedTCGAData’s past year of commit activity
    R 43 9 8 0 Updated Nov 17, 2025
  • doppelgangR Public

    Identify possibly duplicate samples in a list of ExpressionSets

    waldronlab/doppelgangR’s past year of commit activity
    R 5 4 0 0 Updated Nov 17, 2025
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