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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 74 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 148 32

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 9

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    PHP 8 7

Repositories

Showing 10 of 114 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 3 4 5 1 Updated Jan 7, 2026
  • bioanalyzer-backend Public

    Streamline BugSigDB curation with AI-powered scientific paper analysis. Automatically extracts essential microbiome study metadata from research papers, reducing manual curation time and improving data quality for the BugSigDB database.

    waldronlab/bioanalyzer-backend’s past year of commit activity
    Python 0 0 7 1 Updated Jan 7, 2026
  • czieoss6-biocgpu Public

    Website tracking repositories related to czieoss6-biocgpu

    waldronlab/czieoss6-biocgpu’s past year of commit activity
    0 0 0 0 Updated Jan 7, 2026
  • curatedMetagenomicDataCuration Public

    Sample Metadata Curation for curatedMetagenomicData

    waldronlab/curatedMetagenomicDataCuration’s past year of commit activity
    R 29 24 38 (2 issues need help) 1 Updated Jan 5, 2026
  • bugphyzzExports Public
    waldronlab/bugphyzzExports’s past year of commit activity
    R 1 1 3 0 Updated Jan 4, 2026
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    PHP 8 7 18 7 Updated Jan 1, 2026
  • bugsigdbr Public

    R-side access to published microbial signatures from BugSigDB

    waldronlab/bugsigdbr’s past year of commit activity
    R 5 GPL-3.0 3 7 0 Updated Dec 29, 2025
  • VisiumIO Public

    Import spaceranger output and 10X spatial data

    waldronlab/VisiumIO’s past year of commit activity
    R 1 2 0 0 Updated Dec 24, 2025
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 3 0 15 (2 issues need help) 0 Updated Dec 22, 2025
  • ImageFeatureTCGA Public
    waldronlab/ImageFeatureTCGA’s past year of commit activity
    R 1 1 8 0 Updated Dec 19, 2025
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