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lines changed Original file line number Diff line number Diff line change @@ -6,7 +6,9 @@ vignette: >
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date : ' `r format(Sys.Date(), "%B %e, %Y")`'
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output :
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html_document :
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- mathjax : null
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+ mathjax : null
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+ toc : true
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+ toc_float : true
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---
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# Setup
@@ -45,7 +47,7 @@ length(pmids)
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nrow(full.dat)
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```
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- Publication date of the curated papers:
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+ ## Publication date of the curated papers:
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``` {r pubDate}
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pmids <- pmids[!is.na(pmids)]
@@ -77,7 +79,7 @@ Papers containing only empty UP and DOWN signatures (under curation?):
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setdiff(pmids, unique(dat[,"PMID"]))
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```
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- Progress over time:
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+ ## Progress over time:
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``` {r, fig.width=10, fig.height=10}
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dat[,"Curated date"] <- as.character(lubridate::dmy(dat[,"Curated date"]))
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plotProgressOverTime(dat)
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