Search results

Indexing the DB For Common Joins

Type: enhancementenhance existing featureenhance existing feature

Status: Open.

Feature

#1540 In virtualcell/vcell;

· Ezequiel-Valencia opened on Jun 17, 2025



User Caching on the Server

Type: enhancementenhance existing featureenhance existing feature

Status: Open.

Feature

#1539 In virtualcell/vcell;

· Ezequiel-Valencia opened on Jun 17, 2025



General Help Updates for 7.7

User Materials

Status: Open.

Bug

#1534 In virtualcell/vcell;

· CodeByDrescher opened on Jun 10, 2025



Remove Legacy Guest Token Requirement with Requests

Tech Debt

Status: Open.

Bug

#1511 In virtualcell/vcell;

· Ezequiel-Valencia opened on May 21, 2025



Displaying cluster analysis results

High Priority

SpringSaLaDSpringSaLaD integration in VCellSpringSaLaD integration in VCell

Type: enhancementenhance existing featureenhance existing feature

Type: EpicAn epic with list of tasks and Epic fieldAn epic with list of tasks and Epic field

Status: Open.

Feature

#1509 In virtualcell/vcell;

· danv61 opened on May 20, 2025



Displaying statistics for multiple runs

High Priority

SpringSaLaDSpringSaLaD integration in VCellSpringSaLaD integration in VCell

Type: enhancementenhance existing featureenhance existing feature

Type: EpicAn epic with list of tasks and Epic fieldAn epic with list of tasks and Epic field

Status: Open.

Feature

#1508 In virtualcell/vcell;

· danv61 opened on May 20, 2025



Less Heavy Handed Middleware for Java Client Object Mapper

Tech Debt

Status: Open.

Task

#1504 In virtualcell/vcell;

· Ezequiel-Valencia opened on May 14, 2025



Automate running SBML import against all BMDB models

Type: enhancementenhance existing featureenhance existing feature

Status: Open.

Feature

#1503 In virtualcell/vcell;

· danv61 opened on May 12, 2025



VCell Support Automated Email message are too opaque to be very useful

Status: Open.

#1495 In virtualcell/vcell;

· CodeByDrescher opened on May 6, 2025



Lazy load microscopy data in PDE data viewer

Status: Open.

#1494 In virtualcell/vcell;

· jcschaff opened on Apr 29, 2025

Give VCell Api Client Access to User Object

Tech Debt

Status: Open.

#1488 In virtualcell/vcell;

· Ezequiel-Valencia opened on Apr 25, 2025



Introduce Functional Programming to DB Layer

Tech Debt

Type: enhancementenhance existing featureenhance existing feature

Status: Open.

#1487 In virtualcell/vcell;

· Ezequiel-Valencia opened on Apr 25, 2025



Broken existing links in Annotations (both Rel and Alpha)

Type: Bugbug reportbug report

user interface

Status: Open.

Bug

#1486 In virtualcell/vcell;

· vcellmike opened on Apr 23, 2025



Langevin Solver code maintenance

High Priority

SpringSaLaDSpringSaLaD integration in VCellSpringSaLaD integration in VCell

Status: Open.

Feature

#1482 In virtualcell/vcell;

· danv61 opened on Apr 15, 2025

9 comments



Running Langevin Solver in parallel using slurm

High Priority

SpringSaLaDSpringSaLaD integration in VCellSpringSaLaD integration in VCell

Status: Open.

Feature

#1480 In virtualcell/vcell;

· danv61 opened on Apr 15, 2025

1 comment



Improve API Ergonomics

Status: Open.

#1474 In virtualcell/vcell;

· Ezequiel-Valencia opened on Apr 9, 2025



ImageJ N5 data export metadata needs to include time array as well origin and extent

ImageJ

Status: Open.

Bug

#1473 In virtualcell/vcell;

· ACowan0105 opened on Apr 8, 2025



Nightly testing needs further fixing / upgrades

javaPull requests that update Java codePull requests that update Java code

Tech Debt

validation

Status: Open.

Bug

#1472 In virtualcell/vcell;

· CodeByDrescher opened on Apr 8, 2025



Jlibsedml and SedmlImporter should be upgraded to be able to read and appropriately handle v1.5

BioSimulators

SED-ML

Tech Debt

Status: Open.

Feature

#1470 In virtualcell/vcell;

· CodeByDrescher opened on Apr 3, 2025

1 comment



Update VCell to handle many-SubTasks in SedML's RepeatedTask

BioSimulators

javaPull requests that update Java codePull requests that update Java code

SED-ML

Type: enhancementenhance existing featureenhance existing feature

Status: Open.

#1469 In virtualcell/vcell;

· CodeByDrescher opened on Apr 3, 2025



Models with stochastic applications without reactions can not be saved

Type: Bugbug reportbug report

Status: Open.

#1464 In virtualcell/vcell;

· vcellmike opened on Mar 24, 2025



VCell names must be unique, but only sbml Ids are required and unqiue; users meanwhile depend on sbml names to practically use many imported models.

Type: enhancementenhance existing featureenhance existing feature

user interface

Status: Open.

Feature

#1460 In virtualcell/vcell;

· vcellmike opened on Mar 18, 2025

1 comment



Add "Save as Local" to the error message

Type: enhancementenhance existing featureenhance existing feature

Status: Open.

#1451 In virtualcell/vcell;

· vcellmike opened on Mar 4, 2025



Renaming Applications in the tree view does not implement correct "onLoseFocus" behavior

Type: Bugbug reportbug report

Status: Open.

Bug

#1450 In virtualcell/vcell;

· CodeByDrescher opened on Mar 4, 2025

1 comment

Maintain ordering when toggling global flag on variable

Type: enhancementenhance existing featureenhance existing feature

Status: Open.

#1449 In virtualcell/vcell;

· vcellmike opened on Mar 4, 2025

1 comment