https://github.com/vfmatzkin/mesh-skull-reconstruction
A set of algorithms for converting volumetric CT head images into skull registered meshes using deep learning.
You must create a conda environment using the environment.yml file in the root of the repository. The creation of the environment is done by the following command:
conda env create -f env.yml
Run the following commands:
>> conda create -n msr python=3.8 numpy
>> conda activate msr
(msr) >> pip install deformetrica
(msr) >> conda install -c conda-forge jupyterlab
(msr) >> conda install -c simpleitk simpleitk
You can use the several ipynb files in the repository to run the algorithms.