libica

Python SDK to programmatically call Illumina Connected Analytics (ICA) Genomic (multi-omics) data platform and BioInformatics web services.

• ICA API: https://help.ica.illumina.com/reference/r-api
• Install through pip like so:

pip install libica

Overview

• Tested for Python 3.8, 3.9, 3.10, 3.11, 3.12, 3.13
• SDK Guide: PyDoc
• User Guide: https://umccr.github.io/libica/

Roadmap

• See changelog and closed milestones
• See opening milestones for current planning and next SDK release

Release

There are two SDK Python packages, namely v2 and v3. If you are a new starter, please use v3 SDK package. If you are an existing user, please upgrade to v3 when you can. Most of the time, this should be straight forward with minor tuning to application code. Since v3 release, the SDK v2 package now enter into maintenance mode and deprecate by 2026 Oct.

Example

• See examples directory for some example scripts
• See wrapica and icav2-cli-plugins for client application that build on top of SDK

Notice

• MIT License and DISCLAIMER
• The Advanced Genomics Collaboration (TAGC)