Standardize Repo

[Faizal-Eeman]

Description

Standardize repo.

Closes #1

Build log: /hot/software/image/docker-cnv_facets/Docker/development/0.16.0/cnv_facets-v0.16.0-build.log

My command:
docker run -it --rm -u $(id -u):$(id -g) cnv_facets:v0.16.0 cnv_facets.R --version

Warning message:
package 'argparse' was built under R version 3.6.3 
Warning messages:
1: package 'facets' was built under R version 3.6.3 
2: package 'pctGCdata' was built under R version 3.6.3 
Warning message:
package 'data.table' was built under R version 3.6.3 
Warning message:
package 'ggplot2' was built under R version 3.6.3 
Warning message:
package 'gridExtra' was built under R version 3.6.3 
0.16.0; facets=0.5.14

Checklist

• This PR does NOT contain Protected Health Information (PHI). A repo may need to be deleted if such data is uploaded.
  Disclosing PHI is a major problem¹ - Even a small leak can be costly².

• This PR does NOT contain germline genetic data³, RNA-Seq, DNA methylation, microbiome or other molecular data⁴.

• This PR does NOT contain other non-plain text files, such as: compressed files, images (e.g. .png, .jpeg), .pdf, .RData, .xlsx, .doc, .ppt, or other output files.

  To automatically exclude such files using a .gitignore file, see here for example.

• I have read the code review guidelines and the code review best practice on GitHub check-list.

• I have set up or verified the main branch protection rule following the github standards before opening this pull request.

• The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].

• I have added the major changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.

Footnotes

1. UCLA Health reaches $7.5m settlement over 2015 breach of 4.5m patient records ↩

2. The average healthcare data breach costs $2.2 million, despite the majority of breaches releasing fewer than 500 records. ↩

3. Genetic information is considered PHI.
   Forensic assays can identify patients with as few as 21 SNPs ↩

4. RNA-Seq, DNA methylation, microbiome, or other molecular data can be used to predict genotypes (PHI) and reveal a patient's identity. ↩

[wiz-inc-8da00b022c]

Wiz Scan Summary

IaC Misconfigurations
Vulnerabilities
Sensitive Data
Total
Secrets

[yashpatel6]

Looks good!