Merge pull request #404 from uc-cdis/fix/upgrade-pyyaml

Upgrade pyyaml

Author: george42-ctds

.secrets.baseline

@@ -123,7 +123,7 @@
         "filename": "README.md",
         "hashed_secret": "a94a8fe5ccb19ba61c4c0873d391e987982fbbd3",
         "is_verified": false,
-        "line_number": 71
+        "line_number": 72
       }
     ],
     "bin/settings.py": [
@@ -350,5 +350,5 @@
       }
     ]
   },
-  "generated_at": "2023-10-27T19:51:06Z"
+  "generated_at": "2023-11-16T20:43:43Z"
 }

README.md

@@ -1,7 +1,8 @@
 # sheepdog
 
-[![Codacy Badge](https://api.codacy.com/project/badge/Grade/0069fa67707f48a7aabfe9de6b857392)](https://www.codacy.com/app/uc-cdis/sheepdog?utm_source=github.com&utm_medium=referral&utm_content=uc-cdis/sheepdog&utm_campaign=Badge_Grade)
+[![Build Status](https://travis-ci.org/uc-cdis/sheepdog.svg?branch=master)](https://travis-ci.org/uc-cdis/sheepdog)
 [![Coverage Status](https://coveralls.io/repos/github/uc-cdis/sheepdog/badge.svg)](https://coveralls.io/github/uc-cdis/sheepdog)
+
 ## Installation
 
 ### For General Usage

poetry.lock

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "sheepdog"
-version = "5.1.2"
+version = "5.1.3"
 description = "Gen3 Submission Service"
 authors = ["CTDS UChicago <[email protected]>"]
 license = "Apache-2.0"
@@ -21,7 +21,7 @@ boto = ">=2.49.0"
 botocore = ">=1.29.71"
 
 datamodelutils = ">=1.0.0"
-dictionaryutils = ">=3.4.6"
+dictionaryutils = ">=3.4.10"
 envelopes = ">=0.4"
 Flask = ">=2.2.5"
 Flask-SQLAlchemy-Session = ">=1.1"
@@ -31,15 +31,15 @@ graphene = ">=2.0.1"
 jsonschema = ">=3.2"
 lxml = ">=4.6.5"
 psycopg2 = ">=2.8.4"
-PyYAML = "~5.3.1"
+PyYAML = ">=5.4.1"
 requests = ">=2.31.0,<3.0.0"
 simplejson = ">=3.8.1"
 sqlalchemy = ">=1.3.*"
 cdispyutils = ">=2.0.1"
 psqlgraph = ">=3.0.1"
 cdiserrors = ">=1.0.0"
 cdislogging = ">=1.0.0"
-gen3dictionary = ">=2.0.1"
+gen3dictionary = ">=2.0.3"
 gen3datamodel = ">=3.1.0"
 indexclient = ">=2.1.1"
 urllib3 = "<2.0.0"