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Support command line use as described in the README #29

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Support command line use as described in the README #29

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16 changes: 11 additions & 5 deletions segmentify/main.py
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Original file line number Diff line number Diff line change
Expand Up @@ -20,13 +20,19 @@ def main(args):
imgs = np.array(imgs)

with gui_qt():
viewer = Viewer(imgs, heatmap=args.heatmap)


if __name__ == "__main__":
try:
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The simple examples in the README and examples folder don't use heatmaps, and expecting but not getting one was cuasing an error.
I'm not quite sure how to pass in a heatmap using command line arguments, but I assume this part will work if you do?

args.heatmap
except AttributeError:
viewer = Viewer(imgs)
else:
viewer = Viewer(imgs, heatmap=args.heatmap)

def main_cli():
# parser
parser = argparse.ArgumentParser()
parser.add_argument("images", nargs="*", type=str, help="Image to view and segment.")
args = parser.parse_args()

main(args)

if __name__ == "__main__":
main_cli()
1 change: 1 addition & 0 deletions setup.py
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Expand Up @@ -43,4 +43,5 @@ def parse_requirements_file(filename):
'Operating System :: MacOS',
],
install_requires=INSTALL_REQUIRES,
entry_points={'console_scripts': ['segmentify=segmentify.main:main_cli']},
)