"猛犸杯"-宏基因组分析流程
Reproducible hybrid metagenomics with MAG recovery and strain-level resolution
A simpler version of atavide that relies only on slurm or PBS scripts. Some of the settings are specific for our compute resources
This is a python package for analysis of metagenomics data.
Shotgun metagenomic sequences processing pipeline
A reproducible, modular Snakemake workflow designed to process, assemble, and analyze Illumina paired-end reads from host-associated metagenomic samples
A parallelized HPC workflow for shotgun metagenomic data that uses KneadData for quality control, Kraken2 for classification, and Bracken for generating taxonomic profiles.
An automated metagenomics pipeline. Runs in parallel with modular components. All changes are made in the config file. Directory structure auto populates. Dependency is a .txt with list of SRA Accession IDs.
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