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cuteSV-v1.0.11

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@tjiangHIT tjiangHIT released this 16 May 05:50
· 132 commits to master since this release

cutesv (v1.0.11):

  1. Add a script for post-processing typically cuteSV callsets from assembly-based alignments to generate the diploid-assembly-based SV calls.
  2. Give a wiki page for helping uses to achieve assembly-based SV calling.
  3. Improve acquirement of inserted sequence in a read whose primary alignment contains hardclips.
  4. Improve the performance of force calling.
  5. Enable cuteSV to output allele sequences when performing force calling with the VCF generated from other callers.
  6. Fix bugs to avoid the error raised by abnormal SV type.
  7. Update the sort commands used in cuteSV.
  8. Update the parameter of --max_split_parts.