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mt fraction calculation #39

@giovp

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@giovp

In case you are planned to update tutorial at some point, Isaac pointed me to a cleaner way to calculate mt fraction.

adata.var["mt"] = adata.var_names.str.startswith("MT-")
sc.pp.calculate_qc_metrics(adata, qc_vars=["mt"], inplace=True)

It calculates both total_counts_mt and pct_counts_mt

just leaving it here as reference.

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