Description of feature
PCADecodedMetrics computes metrics based on the reconstructed prediction and the reconstructed ground truth. This, in effect, gives an upper bound of CellFlow, but does not correspond to the metrics we eventually compute, as we compare the decoded generated cells with the true values, i.e. not the projected-and-then-reconstructed cells.
PCADecodedMetrics uses the adata only for the reconstruction, while the PCADecodedMetrics2 should now be used to 1) reconstruct the generated cells, and 2) to fetch the ground truth based on the condition_id_key.
Description of feature
PCADecodedMetricscomputes metrics based on the reconstructed prediction and the reconstructed ground truth. This, in effect, gives an upper bound of CellFlow, but does not correspond to the metrics we eventually compute, as we compare the decoded generated cells with the true values, i.e. not the projected-and-then-reconstructed cells.PCADecodedMetricsuses theadataonly for the reconstruction, while thePCADecodedMetrics2should now be used to 1) reconstruct the generated cells, and 2) to fetch the ground truth based on thecondition_id_key.