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  1. vembrane/vembrane Public

    vembrane filters VCF records using python expressions

    Python 66 5

  2. snakemake-workflows/cyrcular-calling Public

    A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.

    Python 4 2

  3. varfish-org/mehari Public

    VEP-like tool for sequence ontology and HGVS annotation of VCF files

    Rust 23 2

  4. snakemake/snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.6k 615

  5. rust-bio/rust-bio Public

    This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

    Rust 1.8k 212

1,476 contributions in the last year

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Contribution activity

November 2025

Created a pull request in varfish-org/mehari that received 2 comments

feat: add support for clinvar counts in db check

Summary by CodeRabbit New Features Clinvar integration: Added support for HGNC and transcript accession count data sources for comprehensive val…

+104 −0 lines changed 2 comments
Opened 3 other pull requests in 3 repositories
Reviewed 2 pull requests in 2 repositories
Opened 1 issue in 1 repository
BfArM-MVH/grz-tools 1 open
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