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Create RudiusMed #10533

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182 changes: 182 additions & 0 deletions RudiusMed
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{
"openapi": "3.0.0",
"info": {
"title": "RudiusMed NGS Integration API",
"version": "1.0.0",
"description": "API for integrating NGS data with RudiusMed genetic module"
},
"servers": [
{
"url": "https://api.rudiusmed.pl/v1/ngs",
"description": "Production server"
},
{
"url": "https://api.rudiusmed.test/v1/ngs",
"description": "Test server"
}
],
"paths": {
"/import": {
"post": {
"summary": "Import NGS data (VCF)",
"security": [{ "bearerAuth": [] }],
"requestBody": {
"required": true,
"content": {
"application/json": {
"schema": {
"type": "object",
"properties": {
"patient_id": { "type": "string" },
"vcf_file": { "type": "string", "format": "base64" },
"gene_list": { "type": "array", "items": { "type": "string" } }
},
"required": ["patient_id", "vcf_file", "gene_list"]
}
}
}
},
"responses": {
"200": {
"description": "Successful import",
"content": {
"application/json": {
"schema": {
"type": "object",
"properties": {
"status": { "type": "string" },
"variants": {
"type": "array",
"items": {
"type": "object",
"properties": {
"gene": { "type": "string" },
"position": { "type": "integer" },
"change": { "type": "string" }
}
}
}
}
}
}
}
},
"400": { "description": "Invalid VCF format" },
"401": { "description": "Unauthorized" },
"500": { "description": "Server error" }
}
}
},
"/report": {
"get": {
"summary": "Get genetic report",
"security": [{ "bearerAuth": [] }],
"parameters": [
{ "name": "patient_id", "in": "query", "required": true, "schema": { "type": "string" } },
{ "name": "date_range", "in": "query", "schema": { "type": "string" } }
],
"responses": {
"200": {
"description": "Successful response",
"content": {
"application/json": {
"schema": {
"type": "object",
"properties": {
"patient_id": { "type": "string" },
"report": {
"type": "object",
"properties": {
"mutations": {
"type": "array",
"items": {
"type": "object",
"properties": {
"gene": { "type": "string" },
"status": { "type": "string" },
"ngf_increase": { "type": "string" }
}
}
},
"pdf_url": { "type": "string", "format": "uri" }
}
}
}
}
}
}
},
"404": { "description": "Report not found" },
"401": { "description": "Unauthorized" }
}
}
},
"/annotate": {
"post": {
"summary": "Annotate genetic variants",
"security": [{ "bearerAuth": [] }],
"requestBody": {
"required": true,
"content": {
"application/json": {
"schema": {
"type": "object",
"properties": {
"variants": {
"type": "array",
"items": {
"type": "object",
"properties": {
"gene": { "type": "string" },
"position": { "type": "integer" },
"change": { "type": "string" }
}
}
},
"databases": { "type": "array", "items": { "type": "string" } }
},
"required": ["variants", "databases"]
}
}
}
},
"responses": {
"200": {
"description": "Successful annotation",
"content": {
"application/json": {
"schema": {
"type": "object",
"properties": {
"annotations": {
"type": "array",
"items": {
"type": "object",
"properties": {
"gene": { "type": "string" },
"impact": { "type": "string" },
"source": { "type": "string" }
}
}
}
}
}
}
}
},
"400": { "description": "Invalid variant data" },
"401": { "description": "Unauthorized" }
}
}
}
},
"components": {
"securitySchemes": {
"bearerAuth": {
"type": "http",
"scheme": "bearer",
"bearerFormat": "JWT"
}
}
}
}