build

update ci #20

	name: "build"
	on:
	push:

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Login to GitHub Container Registry
	uses: docker/login-action@v1
	with:
	registry: ghcr.io
	username: ${{ github.repository_owner }}
	password: ${{ secrets.GHCR_TOKEN }}

	- name: Pull pre-built Docker image
	run: docker pull ghcr.io/${{ github.repository }}:latest

	- name: Install Nextflow
	uses: stracquadaniolab/[email protected]

	- name: List files in the working directory
	run: ls -alh /home/runner/work/gnn-suite/gnn-suite

	- name: Find Nextflow binary location
	run: find /home/runner/work/gnn-suite/gnn-suite -name "nextflow" -exec mv {} /usr/local/bin/nextflow \;

	- name: Cache Nextflow dependencies
	uses: actions/cache@v2
	with:
	path: ${{ env.HOME }}/.nextflow
	key: ${{ runner.os }}-nextflow-${{ hashFiles('nextflow.config') }}
	restore-keys: \|
	${{ runner.os }}-nextflow-

	- name: List available Docker images
	run: \|
	docker images

	- name: Testing Nextflow pipeline with test profile
	run: \|
	chmod +x bin/*
	nextflow run . -profile test,ci,docker

	# Uncomment this section only if you need to push a new image
	# - name: Push image to GitHub Container Registry
	# if: startsWith(github.event.ref, 'refs/tags')
	# uses: docker/build-push-action@v2
	# with:
	# context: .
	# file: containers/Dockerfile
	# platforms: linux/amd64
	# push: true
	# tags: \|
	# ghcr.io/${{ github.repository }}:v0.0.10, ghcr.io/${{ github.repository }}:latest

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