build

add results figures, tables and docker image #7

	name: "build"
	on:
	push:

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Set up QEMU
	uses: docker/setup-qemu-action@v1

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v1

	- name: Login to GitHub Container Registry
	uses: docker/login-action@v1
	with:
	registry: ghcr.io
	username: ${{ github.repository_owner }}
	password: ${{ secrets.GHCR_TOKEN }}

	- name: Cache Docker layers
	uses: actions/cache@v2
	with:
	path: /tmp/.buildx-cache
	key: ${{ runner.os }}-docker-${{ hashFiles('containers/Dockerfile') }}
	restore-keys: \|
	${{ runner.os }}-docker-

	- name: Build Docker image
	uses: docker/build-push-action@v2
	with:
	context: .
	file: containers/Dockerfile
	platforms: linux/amd64
	cache-from: type=local,src=/tmp/.buildx-cache
	load: true
	push: false
	tags: \|
	ghcr.io/${{ github.repository }}:v0.0.10, ghcr.io/${{ github.repository }}:latest

	- name: Install Nextflow
	uses: stracquadaniolab/[email protected]

	- name: Cache Nextflow dependencies
	uses: actions/cache@v2
	with:
	path: ${{ env.HOME }}/.nextflow
	key: ${{ runner.os }}-nextflow-${{ hashFiles('nextflow.config') }}
	restore-keys: \|
	${{ runner.os }}-nextflow-

	- name: Test Nextflow pipeline
	run: \|
	chmod +x bin/*
	nextflow run . -profile test,ci,docker

	- name: Push image to GitHub Container Registry
	if: startsWith(github.event.ref, 'refs/tags')
	uses: docker/build-push-action@v2
	with:
	context: .
	file: containers/Dockerfile
	platforms: linux/amd64
	push: true
	tags: \|
	ghcr.io/${{ github.repository }}:v0.0.10, ghcr.io/${{ github.repository }}:latest

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