chore: bump to v1.0.1

stjude · Apr 9, 2021 · dbb4faa · dbb4faa
1 parent 146b9cb
commit dbb4faa
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Showing 23 changed files with 23 additions and 23 deletions.
diff --git a/stjude_warden_bam/dxapp.json b/stjude_warden_bam/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN [BAM] (St. Jude)",
   "summary": "This app runs htseq-count and voom/limma on RNA-SEQ data",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "BAM_FILES",

diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Generate BigWig",
   "summary": "Generate BigWig files from bed coverage file",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "bedgraph_file",

diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: BigWig viewer",
   "summary": "Generate bookmarks to Protein Paint viewer for BigWig Files",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "viewer",

diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_combine_counts/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_combine_counts/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Combine HTSeq Counts",
   "summary": "Combine HTSeq Count files into a single file",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "count_files",

diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_htseq_count/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_htseq_count/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: HTSeq-Count",
   "summary": "Generate per gene read (pair) counts",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_bam",

diff --git a/...n_bam/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json b/...n_bam/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Simple Differential Expression",
   "summary": "Comparison between conditions.  Useful for when one condition has less three samples",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_count_file",

diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: LIMMA",
   "summary": "Run VOOM normalization and LIMMA analysis",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_count_file",

diff --git a/stjude_warden_counts/dxapp.json b/stjude_warden_counts/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN [Counts] (St. Jude)",
   "summary": "This app runs voom/limma differential expression on RNA-SEQ data",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "COUNT_FILES",

diff --git a/stjude_warden_counts/resources/app_data/internal_source/warden_combine_counts/dxapp.json b/stjude_warden_counts/resources/app_data/internal_source/warden_combine_counts/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Combine HTSeq Counts",
   "summary": "Combine HTSeq Count files into a single file",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "count_files",

diff --git a/...ounts/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json b/...ounts/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Simple Differential Expression",
   "summary": "Comparison between conditions.  Useful for when one condition has less three samples",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_count_file",

diff --git a/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/dxapp.json b/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: LIMMA",
   "summary": "Run VOOM normalization and LIMMA analysis",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_count_file",

diff --git a/stjude_warden_fastq/dxapp.json b/stjude_warden_fastq/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN [FastQ] (St. Jude)",
   "summary": "This app runs the STAR Aligner, htseq-count, and voom/limma on RNA-SEQ data",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "FASTQ_FILES",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Generate BigWig",
   "summary": "Generate BigWig files from bed coverage file",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "bedgraph_file",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: BigWig viewer",
   "summary": "Generate bookmarks to Protein Paint viewer for BigWig Files",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "viewer",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_counts/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_counts/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Combine HTSeq Counts",
   "summary": "Combine HTSeq Count files into a single file",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "count_files",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_flagstat/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_flagstat/dxapp.json
@@ -3,7 +3,7 @@
   "title": "warden_combine_flagstat",
   "summary": "warden_combine_flagstat",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "flagstat_files",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/dxapp.json
@@ -3,7 +3,7 @@
   "title": "warden_combine_sj_out",
   "summary": "warden_combine_sj_out",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "sj_out_files",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_fastqc/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_fastqc/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: FASTQC",
   "summary": "FASTQC Analysis",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "fastq_input",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_htseq_count/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_htseq_count/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: HTSeq-Count",
   "summary": "Generate per gene read (pair) counts",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_bam",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_name_sort_bam/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_name_sort_bam/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Sort BAM by name",
   "summary": "BAM Output generated in alignment phase is sorted by read name for analysis by HTSeq-count",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_bam",

diff --git a/...fastq/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json b/...fastq/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: Simple Differential Expression",
   "summary": "Comparison between conditions.  Useful for when one condition has less three samples",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_count_file",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_star_aligner/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_star_aligner/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: STAR Aligner",
   "summary": "Runs the STAR alignment program on input data",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "read_file1",

diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/dxapp.json
@@ -3,7 +3,7 @@
   "title": "WARDEN: LIMMA",
   "summary": "Run VOOM normalization and LIMMA analysis",
   "dxapi": "1.0.0",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "inputSpec": [
     {
       "name": "input_count_file",