Add missing script to DNAnexus app folder

stjude · Jun 28, 2021 · ce41f54 · ce41f54
1 parent 3eca180
commit ce41f54
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/dx_app/resources/stjude/bin/getReadLength.sh b/dx_app/resources/stjude/bin/getReadLength.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+bamfile=$1
+
+samtools view $bamfile | head -n 1000 | cut -f 10 | awk '{ print length($0) }' | sort -n | tail -n 1