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Steinegger Lab

Steinegger Lab Github repositories

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  1. foldseek foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    C 921 117

  2. foldcomp foldcomp Public

    Compressing protein structures effectively with torsion angles

    C++ 170 14

  3. Metabuli Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    C++ 131 10

  4. foldmason foldmason Public

    Multiple Protein Structure Alignment at Scale with FoldMason

    C 161 16

  5. unicore unicore Public

    Universal and efficient core gene phylogeny with Foldseek and ProstT5

    Rust 54 5

  6. folddisco folddisco Public

    Fast indexing and search of discontinuous motifs in protein structures

    Rust 19 2

Repositories

Showing 10 of 29 repositories
  • probeit Public

    Design capture probes

    steineggerlab/probeit’s past year of commit activity
    Python 9 GPL-3.0 2 0 0 Updated Mar 20, 2025
  • foldmason Public

    Multiple Protein Structure Alignment at Scale with FoldMason

    steineggerlab/foldmason’s past year of commit activity
    C 161 GPL-3.0 16 15 0 Updated Mar 20, 2025
  • SeekRank Public

    Rank homologous protein sequences based on a regressor trained on experimental measures

    steineggerlab/SeekRank’s past year of commit activity
    Jupyter Notebook 10 MIT 1 0 0 Updated Mar 19, 2025
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    steineggerlab/alphafold’s past year of commit activity
    Python 11 Apache-2.0 2,371 0 2 Updated Mar 18, 2025
  • foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    steineggerlab/foldseek’s past year of commit activity
    C 921 GPL-3.0 117 104 5 Updated Mar 18, 2025
  • steineggerlab/afdb-clusters-web’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 2 1 0 Updated Mar 17, 2025
  • taxoview Public

    A Vue.js plugin for generating interactive Sankey diagrams using Kraken report data

    steineggerlab/taxoview’s past year of commit activity
    Vue 5 GPL-3.0 1 0 0 Updated Mar 13, 2025
  • unicore Public

    Universal and efficient core gene phylogeny with Foldseek and ProstT5

    steineggerlab/unicore’s past year of commit activity
    Rust 54 GPL-3.0 5 3 0 Updated Mar 13, 2025
  • Metabuli-App Public
    steineggerlab/Metabuli-App’s past year of commit activity
    HTML 28 GPL-3.0 2 0 0 Updated Mar 13, 2025
  • Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    steineggerlab/Metabuli’s past year of commit activity
    C++ 131 GPL-3.0 10 17 0 Updated Mar 12, 2025

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