Skip to content
CI tests

CI tests #1780

Sign in to view logs

CI tests

CI tests #1780

Manually triggered February 7, 2025 22:15
@RasmusSkytteRasmusSkytte
⁠ ca4bc6e
feature/combineasy
Status Failure
Total duration 19m 46s
Artifacts 6

all-workflows.yaml

on: workflow_dispatch
⚙️ Context
0s
⚙️ Context
⚙️ Dispatch  /  ⚙️ Determine downstream workflow triggers
9s
⚙️ Dispatch / ⚙️ Determine downstream workflow triggers
⚙️ Dispatch  /  ...  /  🛠️ Store dependency versions
2m 8s
⚙️ Dispatch / update-lockfile / 🛠️ Store dependency versions
⚙️ Dispatch  /  🐞 Inspect trigger output
0s
⚙️ Dispatch / 🐞 Inspect trigger output
⚙️ Dispatch  /  ...  /  📖 Document
2m 5s
⚙️ Dispatch / document / 📖 Document
⚙️ Dispatch  /  ...  /  📖 README
58s
⚙️ Dispatch / render-readme / 📖 README
⚙️ Dispatch  /  ...  /  📖 pkgdown: Build
1m 42s
⚙️ Dispatch / pkgdown / 📖 pkgdown: Build
⚙️ Dispatch  /  ...  /  🔎 Check: Build package
3m 54s
⚙️ Dispatch / R-CMD-check / 🔎 Check: Build package
Matrix: run-all-AEF-DFF-workflows / code-coverage / code-coverage-sqlite
⚙️ Dispatch  /  ...  /  🧪 Tests: DuckDB
6m 32s
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
⚙️ Dispatch  /  ...  /  🧪 Tests: PostgreSQL
6m 27s
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
⚙️ Dispatch  /  ...  /  🧪 Tests: SQL Server 2022
6m 37s
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
⚙️ Dispatch  /  ...  /  🖋️ Lint
2m 42s
⚙️ Dispatch / lint / 🖋️ Lint
⚙️ Dispatch  /  ...  /  🔠 Spelling
58s
⚙️ Dispatch / spell-checker / 🔠 Spelling
⚙️ Dispatch  /  ...  /  🔍 pkgdown: Determine if pre-release
0s
⚙️ Dispatch / pkgdown / 🔍 pkgdown: Determine if pre-release
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (release, no dependencies)
6m 21s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (r-devel)
10m 40s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (R v4.3.0)
10m 46s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Matrix: run-all-AEF-DFF-workflows / R-CMD-check / R-CMD-check
⚙️ Dispatch  /  ...  /  🧪 Tests: Upload to codecov.io
0s
⚙️ Dispatch / code-coverage / 🧪 Tests: Upload to codecov.io
⚙️ Dispatch  /  ...  /  🧼 pkgdown: Clean up
0s
⚙️ Dispatch / pkgdown / 🧼 pkgdown: Clean up
⚙️ Dispatch  /  ...  /  🚀 pkgdown: Deploy
0s
⚙️ Dispatch / pkgdown / 🚀 pkgdown: Deploy
Fit to window
Zoom out
Zoom in

Annotations

52 errors and 2 warnings
⚙️ Dispatch / pkgdown / 📖 pkgdown: Build
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
Running examples in ‘diseasy-Ex.R’ failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
No such keg: /opt/homebrew/Cellar/[email protected]
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
Running examples in ‘diseasy-Ex.R’ failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
processing vignette 'creating-ensembles.Rmd' failed with diagnostics:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Vignette re-building failed.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
Running examples in ‘diseasy-Ex.R’ failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
Running examples in 'diseasy-Ex.R' failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
Canceling since a higher priority waiting request for 'R-CMD-check-feature/combineasy' exists
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Canceling since a higher priority waiting request for 'R-CMD-check-feature/combineasy' exists
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

Artifacts

Produced during runtime
Name Size
Linux-X64-r-0-results
11.4 MB
Linux-X64-roldrel-1-3-results
8.17 MB
Linux-X64-rrelease-2-results
8.13 MB
Windows-X64-rrelease-1-results
6.65 MB
macOS-ARM64-rrelease-0-results
8.17 MB
package-tarball
2.37 MB