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CI tests #1775

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CI tests

CI tests #1775

Manually triggered February 7, 2025 18:04
@RasmusSkytteRasmusSkytte
⁠ 3f42b9d
feature/combineasy
Status Failure
Total duration 1h 19m 2s
Artifacts 6

all-workflows.yaml

on: workflow_dispatch
⚙️ Context
0s
⚙️ Context
⚙️ Dispatch  /  ⚙️ Determine downstream workflow triggers
5s
⚙️ Dispatch / ⚙️ Determine downstream workflow triggers
⚙️ Dispatch  /  ...  /  🛠️ Store dependency versions
5m 20s
⚙️ Dispatch / update-lockfile / 🛠️ Store dependency versions
⚙️ Dispatch  /  🐞 Inspect trigger output
0s
⚙️ Dispatch / 🐞 Inspect trigger output
⚙️ Dispatch  /  ...  /  📖 Document
1m 49s
⚙️ Dispatch / document / 📖 Document
⚙️ Dispatch  /  ...  /  📖 README
2m 21s
⚙️ Dispatch / render-readme / 📖 README
⚙️ Dispatch  /  ...  /  📖 pkgdown: Build
2m 0s
⚙️ Dispatch / pkgdown / 📖 pkgdown: Build
⚙️ Dispatch  /  ...  /  🔎 Check: Build package
3m 31s
⚙️ Dispatch / R-CMD-check / 🔎 Check: Build package
Matrix: run-all-AEF-DFF-workflows / code-coverage / code-coverage-sqlite
⚙️ Dispatch  /  ...  /  🧪 Tests: DuckDB
6m 43s
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
⚙️ Dispatch  /  ...  /  🧪 Tests: PostgreSQL
6m 39s
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
⚙️ Dispatch  /  ...  /  🧪 Tests: SQL Server 2022
6m 42s
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
⚙️ Dispatch  /  ...  /  🖋️ Lint
3m 18s
⚙️ Dispatch / lint / 🖋️ Lint
⚙️ Dispatch  /  ...  /  🔠 Spelling
58s
⚙️ Dispatch / spell-checker / 🔠 Spelling
⚙️ Dispatch  /  ...  /  🔍 pkgdown: Determine if pre-release
0s
⚙️ Dispatch / pkgdown / 🔍 pkgdown: Determine if pre-release
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (release, no dependencies)
6m 21s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (r-devel)
1h 6m
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (R v4.3.0)
12m 8s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Matrix: run-all-AEF-DFF-workflows / R-CMD-check / R-CMD-check
⚙️ Dispatch  /  ...  /  🧪 Tests: Upload to codecov.io
0s
⚙️ Dispatch / code-coverage / 🧪 Tests: Upload to codecov.io
⚙️ Dispatch  /  ...  /  🧼 pkgdown: Clean up
0s
⚙️ Dispatch / pkgdown / 🧼 pkgdown: Clean up
⚙️ Dispatch  /  ...  /  🚀 pkgdown: Deploy
0s
⚙️ Dispatch / pkgdown / 🚀 pkgdown: Deploy
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56 errors and 16 warnings
⚙️ Dispatch / pkgdown / 📖 pkgdown: Build
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
No such keg: /opt/homebrew/Cellar/[email protected]
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
processing vignette 'creating-ensembles.Rmd' failed with diagnostics:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Vignette re-building failed.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
plot:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
parse error in file 'lines':
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
plot:
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
parse error in file 'lines':
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
plot:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
parse error in file 'lines':
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
plot:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
parse error in file 'lines':
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
plot:
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
parse error in file 'lines':
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
plot:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
parse error in file 'lines':
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
plot:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
parse error in file 'lines':

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-r-0-results
11.3 MB
sha256:a7f8450f96d47a25ce02e3d984a7d823f53b9ad9b7d82164e1873e220c571d0b
Linux-X64-roldrel-1-3-results
8.16 MB
sha256:511c5ab853bac1accedd8fa5ada4c449c99cedb5792b6b8f617768d536710d12
Linux-X64-rrelease-2-results
8.12 MB
sha256:7750e520a89d4835b90dea18ad7c3e7924f0ee9cbee55d4250718ed9158b5870
Windows-X64-rrelease-1-results
6.64 MB
sha256:2a4452d3d0f056f16e4808e92355fee5656175116e9fc58ae5edea76ee4ccf00
macOS-ARM64-rrelease-0-results
8.16 MB
sha256:396552ae1b094f7d9c18b20f7dbb0d225f00b07dfba94b7c639a24afd21f71ac
package-tarball
2.37 MB
sha256:229fe3c87b1befb4d47177250b736b752a4c43d181ce61138d676c75bf8ccb7c