Skip to content
@som-shahlab

som-shahlab

Pinned Loading

  1. medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    91 9

  2. ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 154 14

  3. femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 125 19

  4. trove Public

    Weakly supervised medical named entity classification

    Python 70 21

  5. meds_reader Public

    C++ 17

Repositories

Showing 10 of 51 repositories
  • long_context_clues Public

    Taking off-the-shelf HuggingFace models and training them on EHR data

    Jupyter Notebook 13 Apache-2.0 4 1 0 Updated Mar 4, 2025
  • femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 125 Apache-2.0 19 4 1 Updated Mar 3, 2025
  • clinical_trial_patient_matching Public

    Zero-shot clinical trial matching with LLMs

    Python 9 3 0 0 Updated Mar 1, 2025
  • aplusml Public

    APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models

    Jupyter Notebook 20 Apache-2.0 4 4 0 Updated Mar 1, 2025
  • med-s1 Public Forked from simplescaling/s1

    s1: Simple test-time scaling

    Jupyter Notebook 0 Apache-2.0 670 0 0 Updated Mar 1, 2025
  • motor_tutorial Public

    Tutorial repository for the official MOTOR release

    Jupyter Notebook 8 Apache-2.0 0 0 0 Updated Feb 22, 2025
  • clinical_trial_patient_matching-website Public

    Public facing website for zero-shot CT patient matching paper

    JavaScript 4 0 0 0 Updated Feb 19, 2025
  • ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 154 Apache-2.0 14 4 0 Updated Feb 17, 2025
  • medalign-website Public

    Landing page and website for the MedAlign project

    HTML 0 MIT 2 0 2 Updated Feb 16, 2025
  • inspect-website Public
    SCSS 0 MIT 0 0 0 Updated Feb 3, 2025
View all repositories