add TYGS images to whole-genome workshop section

references.bib

@@ -581,3 +581,31 @@ @ARTICLE{Edgar2018-cm
   copyright = "https://academic.oup.com/journals/pages/about\_us/legal/notices",
   language  = "en"
 }
+
+@ARTICLE{Maiden2013-jh,
+  title     = "{MLST} revisited: the gene-by-gene approach to bacterial
+               genomics",
+  author    = "Maiden, Martin C J and Jansen van Rensburg, Melissa J and Bray,
+               James E and Earle, Sarah G and Ford, Suzanne A and Jolley, Keith
+               A and McCarthy, Noel D",
+  abstract  = "Multilocus sequence typing (MLST) was proposed in 1998 as a
+               portable sequence-based method for identifying clonal
+               relationships among bacteria. Today, in the whole-genome era of
+               microbiology, the need for systematic, standardized descriptions
+               of bacterial genotypic variation remains a priority. Here, to
+               meet this need, we draw on the successes of MLST and 16S rRNA
+               gene sequencing to propose a hierarchical gene-by-gene approach
+               that reflects functional and evolutionary relationships and
+               catalogues bacteria 'from domain to strain'. Our gene-based
+               typing approach using online platforms such as the Bacterial
+               Isolate Genome Sequence Database (BIGSdb) allows the scalable
+               organization and analysis of whole-genome sequence data.",
+  journal   = "Nat. Rev. Microbiol.",
+  publisher = "Springer Science and Business Media LLC",
+  volume    =  11,
+  number    =  10,
+  pages     = "728--736",
+  month     =  oct,
+  year      =  2013,
+  language  = "en"
+}

whole_genome.qmd

@@ -9,18 +9,29 @@ Please ensure that you have downloaded the genome file for your isolate (`isolat
 ## TYGS
 
 - Go to the [TYGS](https://tygs.dsmz.de/) server
+
+![](assets/images/TYGS/01-tygs.png)
+
 - Click on `Submit your query` (top menu), or `Submit your job` (button) to reach the query page
+
+![](assets/images/TYGS/02-tygs.png)
+
 - Click on the `Browse…` button and navigate to your `isolate_genome.fasta` file to select it for classification.
 - Enter your email address in the `Provide contact details` field
+
+![](assets/images/TYGS/03-tygs.png)
+
 - Click on `Submit query` and wait for the results
 
+![](assets/images/TYGS/04-tygs.png)
+
 ::: { .callout-warning }
 This may take some time (maybe over an hour, depending on server load!), and may not be complete before the end of the workshop.
 
 **Please move on to the next section while you are waiting.**
 :::
 
-- When you get the result confirmation email, check the PDF 
+- **When you get the result confirmation email, inspect the PDF** 
 
 ::: { .callout-important title="Questions"}
 1. What is the predicted taxonomic classification of your isolate's genome?