Question about reading VCF file

[shy218]

I currently test the packages on a small vcf dataset, but the chromosome in the vcf file has Y, (I think it is a chromosome for sex?). However, sgkit function vcf_to_zarr() gives an error that "Y is not in list." Do I need to first convert Y into a number?

[hammer]

@shy218 I’m glad to hear you’re working with data! Could you please use the issue tracker for issues you encounter when using the software? They’re easier to track that way.

[hammer]

Discussions are great for more general topics about what to work on and how things work.

[shy218]

I am sorry. I am new to these functions on Github.

[hammer]

No worries!