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sgkit-dev

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  1. sgkit sgkit Public

    Scalable genetics toolkit

    Python 259 37

  2. bio2zarr bio2zarr Public

    Convert bioinformatics file formats to Zarr

    Python 37 10

  3. vcztools vcztools Public

    Partial reimplementation of bcftools for VCF Zarr

    Python 16 6

  4. vcf-zarr-spec vcf-zarr-spec Public

    VCF Zarr Specification

    15 2

  5. sgkit-requirements sgkit-requirements Public

    Repo for collecting requirements.

    Jupyter Notebook 6 1

  6. sgkit-publication sgkit-publication Public

    Sgkit publication repository

    TeX 5 5

Repositories

Showing 10 of 15 repositories
  • sgkit Public

    Scalable genetics toolkit

    sgkit-dev/sgkit’s past year of commit activity
    Python 259 Apache-2.0 37 193 (2 issues need help) 10 Updated Jul 1, 2025
  • sgkit-benchmarks-asv Public
    sgkit-dev/sgkit-benchmarks-asv’s past year of commit activity
    JavaScript 0 1 0 0 Updated Jul 1, 2025
  • vcztools Public

    Partial reimplementation of bcftools for VCF Zarr

    sgkit-dev/vcztools’s past year of commit activity
    Python 16 Apache-2.0 6 51 4 Updated Jun 23, 2025
  • bio2zarr Public

    Convert bioinformatics file formats to Zarr

    sgkit-dev/bio2zarr’s past year of commit activity
    Python 37 Apache-2.0 10 56 (3 issues need help) 2 Updated May 28, 2025
  • vcf-zarr-spec Public

    VCF Zarr Specification

    sgkit-dev/vcf-zarr-spec’s past year of commit activity
    15 Apache-2.0 2 13 0 Updated May 20, 2025
  • vcf-zarr-publication Public

    Manuscript and associated scripts for vcf-zarr publication

    sgkit-dev/vcf-zarr-publication’s past year of commit activity
    Jupyter Notebook 3 11 1 0 Updated Apr 1, 2025
  • SAIGE-VCZ Public Forked from saigegit/SAIGE

    SAIGE extension that supports VCF Zarr

    sgkit-dev/SAIGE-VCZ’s past year of commit activity
    C++ 0 GPL-3.0 30 0 0 Updated Mar 6, 2025
  • hypothesis-vcf Public

    Hypothesis strategy for generating VCF

    sgkit-dev/hypothesis-vcf’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jan 29, 2025
  • sgkit-publication Public

    Sgkit publication repository

    sgkit-dev/sgkit-publication’s past year of commit activity
    TeX 5 5 19 0 Updated Mar 6, 2024
  • sgkit-publication-backup Public Forked from sgkit-dev/sgkit-publication

    Backup of sgkit publication repository, original manubot version

    sgkit-dev/sgkit-publication-backup’s past year of commit activity
    HTML 0 5 0 0 Updated Feb 27, 2023
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