NGFF v06 transformations - #1182

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Tomaz-Vieira wants to merge 26 commits into

transformation_managerfrom

feature/ngff_v06_transforms

Commits on Aug 21, 2026

Creates the graph module based on the Ngff* classes
Tomaz-Vieira
committed
f57dc1d

Commits on Sep 2, 2026

addresses some PR comments, simplifies MapAxis
Tomaz-Vieira
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b351aa0

Commits on Sep 3, 2026

Adds ProjectAxisEdge, makes inverse return optional
Tomaz-Vieira
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1d4d7cb

Commits on Sep 4, 2026

Update ome-zarr dependency
Tomaz-Vieira
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2a8bc97
Moves exceptions to exceptions.py, edge names default to None
Tomaz-Vieira
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868c950
Use custom exceptions everywhere, adds Raises to docstrings
Tomaz-Vieira
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7565622

Commits on Sep 8, 2026

Fix Affine.from_affine_matrix slicing]
Tomaz-Vieira
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541335f
Fix coords bug when reading from OMEZarrMultiscale. Some cleanup
Tomaz-Vieira
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9d56ff2
Adds test for parsing OMEZarrMultiscale
Tomaz-Vieira
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675820d

Commits on Sep 9, 2026

Adds transformations tests, fixes some slicing bugs

Tomaz-Vieira
and
claude
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7fa8b26
Adds basic .sel test to parsed multiscale
Tomaz-Vieira
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2bd6eee
Removes unused class
Tomaz-Vieira
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9db6798
Adds more slicing tests to parsed multiscales
Tomaz-Vieira
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5538c95
Adds/fixes comments in try_parse_ngff06_multiscales
Tomaz-Vieira
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fcbd639
Removes to_model methods for now
Tomaz-Vieira
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1cd92c8
Moves AxisParsingException to exceptions.py
Tomaz-Vieira
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8963e04
Moves AxisParsingException back into vert.py to prevent circular imports
Tomaz-Vieira
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5d197cc
Fixes docstrings, list exceptions in "Raises"

Tomaz-Vieira
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claude
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ca0bac1
Incorporates parse_project_axis
Tomaz-Vieira
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4b2479f
Fixes parsing translatiion model getting bad name

Tomaz-Vieira
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claude
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83c91df
Adds test for parsing *Edge transforms from ngff

Tomaz-Vieira
and
claude
committed
79307e3

Commits on Sep 10, 2026

Commits on Sep 11, 2026

Fixes dependencies on ome-zarr and ome-zarr-models
Tomaz-Vieira
committed
367b16e
Cleans up transform_points for rotation and affine
Tomaz-Vieira
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c2d1e5a
Fixes renamed fields in ome-zarr-models
Tomaz-Vieira
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84e3669