moving files around

scarere · Mar 31, 2022 · e0b7815 · e0b7815
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diff --git a/README.md b/README.md
@@ -5,3 +5,5 @@ Final Project for MBP1413: Biomedical Applicationg of Artificial Intelligence
 ## Authors
 - Sayan Nag
 - Shawn Carere
+
+To train a model and replicate results, use the train_baselines_shawn.py script in the training directory.
diff --git a/code/analysis/image_examples.png → analysis/image_examples.png b/code/analysis/image_examples.png → analysis/image_examples.png
diff --git a/code/analysis/model_analysis.ipynb → analysis/model_analysis.ipynb b/code/analysis/model_analysis.ipynb → analysis/model_analysis.ipynb
diff --git a/code/analysis/rot_mag.png → analysis/rot_mag.png b/code/analysis/rot_mag.png → analysis/rot_mag.png
diff --git a/code/analysis/rot_mag_test.png → analysis/rot_mag_test.png b/code/analysis/rot_mag_test.png → analysis/rot_mag_test.png
diff --git a/code/analysis/test_model.ipynb → analysis/test_model.ipynb b/code/analysis/test_model.ipynb → analysis/test_model.ipynb
diff --git a/code/README.md b/code/README.md
diff --git a/code/data/README.md → data/README.md b/code/data/README.md → data/README.md
diff --git a/code/data/create_masks.py → data/create_masks.py b/code/data/create_masks.py → data/create_masks.py
diff --git a/code/data/kaggle_raw/README.md → data/kaggle_raw/README.md b/code/data/kaggle_raw/README.md → data/kaggle_raw/README.md
diff --git a/code/data/process_raw_data.ipynb → data/process_raw_data.ipynb b/code/data/process_raw_data.ipynb → data/process_raw_data.ipynb
diff --git a/code/package_versions.txt → example_env.txt b/code/package_versions.txt → example_env.txt
@@ -11,14 +11,17 @@ asttokens==2.0.5
 attrs==21.4.0
 backcall==0.2.0
 bleach==4.1.0
+certifi==2021.10.8
 cffi==1.15.0
+charset-normalizer==2.0.12
 cycler==0.11.0
 debugpy==1.5.1
 decorator==5.1.1
 defusedxml==0.7.1
 entrypoints==0.4
 executing==0.8.2
 fonttools==4.29.1
+idna==3.3
 imageio==2.16.1
 importlib-resources==5.4.0
 ipykernel==6.9.1
@@ -67,6 +70,7 @@ pytz==2021.3
 PyWavelets==1.2.0
 PyYAML==6.0
 pyzmq==22.3.0
+requests==2.27.1
 scikit-image==0.19.2
 scikit-learn==1.0.2
 scipy==1.8.0
@@ -77,13 +81,15 @@ terminado==0.13.3
 testpath==0.6.0
 threadpoolctl==3.1.0
 tifffile==2022.2.9
-torch==1.10.2
+torch==1.11.0
 torchinfo==1.6.3
 torchmetrics==0.7.2
+torchvision==0.12.0
 tornado==6.1
 tqdm==4.62.3
 traitlets==5.1.1
 typing_extensions==4.1.1
+urllib3==1.26.9
 wcwidth==0.2.5
 webencodings==0.5.1
 widgetsnbextension==3.5.2

diff --git a/figures/comparisons.png b/figures/comparisons.png
diff --git a/figures/comparisonsNew.png b/figures/comparisonsNew.png
diff --git a/figures/cosine_attn.png b/figures/cosine_attn.png