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Fix bugs in create_objective_function #37

Fix bugs in create_objective_function

Fix bugs in create_objective_function #37

Re-run triggered January 23, 2025 09:57
Status Failure
Total duration 38m 1s
Artifacts 1

check-bioc.yml

on: pull_request
Matrix: build-check
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10 errors and 34 warnings
ubuntu-latest (4.1)
Process completed with exit code 1.
macOS-latest (4.1)
Failed to install 'CARNIVAL' from local:
macOS-latest (4.1)
Process completed with exit code 1.
macOS-latest (4.1)
Failed to install 'CARNIVAL' from local:
macOS-latest (4.1)
Process completed with exit code 1.
macOS-latest (4.1)
No such keg: /opt/homebrew/Cellar/[email protected]
windows-latest (4.1)
Failed to install 'CARNIVAL' from local:
windows-latest (4.1)
Process completed with exit code 1.
windows-latest (4.1)
Failed to install 'CARNIVAL' from local:
windows-latest (4.1)
Process completed with exit code 1.
macOS-latest (4.1)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
ubuntu-latest (4.1)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
windows-latest (4.1)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
ubuntu-latest (4.1)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
macOS-latest (4.1)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/bioc/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
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macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/workflows/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/books/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/bioc/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/workflows/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/books/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
harfbuzz 10.2.0 is already installed and up-to-date. To reinstall 10.2.0, run: brew reinstall harfbuzz
macOS-latest (4.1)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/bioc/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/workflows/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/books/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/bioc/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
unable to access index for repository https://bioconductor.org/packages/3.14/workflows/bin/macosx/big-sur-arm64/contrib/4.1:
macOS-latest (4.1)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macOS-latest (4.1)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
windows-latest (4.1)
No files were found with the provided path: check. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
Linux-biocversion-RELEASE_3_14-r-4.1-results Expired
4.75 MB