Initial Commit

Documentation/AppA.aux

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+\relax 
+\providecommand\hyper@newdestlabel[2]{}
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+\@writefile{lot2}{\addvspace {10\p@ }}
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+\@writefile{toc}{\contentsline {section}{\numberline {A.9} hyphenat}{44}{section.A.9}}
+\@writefile{toc2}{\contentsline {section}{\numberline {A.9} hyphenat}{44}{section.A.9}}
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+}

Documentation/AppA.tex

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+% !TEX root =  Main.tex
+\chapter{Other Packages}
+\label{package}
+This appendix lists the packages which have interesting behavior when used along side maine-thesis.cls.  If you find a package that creates difficulties which isn't listed here, please email me the name of the package, the version you have, and the particular difficulty that you encountered.
+
+\section{Working Packages}
+While not thoroughly tested, the following packages have been used with this class file without incident:
+\begin{itemize}
+\item{acronym (v1.35, last revised 2009/10/20)}
+\item{epic (v1.2, last revised 1986/06/01)}
+\item{epstopdf (v2.5, last revised 2010/02/09)}
+\item{excludeonly (v1.0, last revised 2003/03/14)}
+\item{graphics (v1.0o, last revised 2009/02/05)}
+\item{graphicx (v1.0f, last revised 1999/02/16)}
+\item{hhline (v2.03, last revised 1994/05/23)}
+\item{natbib (v8.31a, last revised 2009/11/07)}
+\item{pdfpages (v0.4j, last revised 2010/01/12)}
+\item{tabularx (v2.07, last revised 1999/01/07)}
+\item{tabulary (v0.9, last revised 2008/12/01)}
+\end{itemize}
+If you experience a problem with any of these packages please make sure you have the version listed above or a more recent one before submitting a bug report.
+
+If you use a package other than one of the ones listed above without incident, please email me (\email) the package name and version so that I can add it to the above list.
+
+\section{caption and subfig}
+This class file already formats captions for figures and tables according the requirements of the Graduate School.  As a result, the caption package, which allows you to manipulate how these elements appear, should not be used.
+
+The one exception to this is if you use the caption or subfig package (which depends on the caption package) to create multi-page floats.\footnote{If you need to create subfigures but don't need a figure to span multiple pages, use the subfigure package, as it won't conflict with this class file.} If you do, you'll find that the caption formats and the List of Figures/Tables do not typeset the way the Graduate School wants them to be typeset.  In particular, the separator between ``Figure \#.\#'' and the caption will be ``:\space'' instead of ``.\space'' and the word ``Figure'' or ``Table'' will not accompany the number in the respective list.  To avoid this you need to add the following code to your preamble:
+\begin{verbatim}
+\captionsetup{labelsep=period,listofformat=simple}
+\makeatletter
+\renewcommand\p@figure{Figure\space}
+\renewcommand\p@table{Table\space}
+\makeatother
+\end{verbatim}
+If you have defined additional floats, you will need more lines like those for figures and tables.
+
+\emph{Note:} If you use the subfig package, the following warning will be raised: ``Package caption Warning: Unsupported document class (or package) detected, usage of the caption package is not recommended.''  It should be safe to ignore this warning, if you don't use any other packages which manipulate the caption command.  For anything beyond that, I can't make any guarantees on what will work and what won't.
+
+This class file was tested with subfig v1.3, last revised 2005/06/28 and caption v3.1h, last revised 2008/04/01.  If you're having problems with either package, make sure you have these versions or more recent ones before submitting a bug report.  The behavior of these packages in a two-volume thesis has not been tested.
+
+\section{color}
+The class file uses this package to color the \verb=\comment= command in draft mode.  As a result, any attempt to load this package with options by using \verb=\usepackage= will result in an option clash error.  Instead, pass whatever options for color you want to the class file and they will automatically be passed along to color when it is loaded.
+
+The class file was tested with v1.0j, last revised 2005/11/14.  If you're having problems with color, make sure you have this version or a more recent one before submitting a bug report.
+
+\section{footmisc}
+The class file uses this package to eliminate the usual rule that occurs between the body of the text and the footnotes at the bottom of the page.  As a result, any attempt to load this package with options by using \verb=\usepackage= will result in an option clash error.  Instead, pass whatever options for footmisc you want to the class file and they will automatically be passed along to footmisc when it is loaded.
+
+The class file was tested with v5.5a, last revised 2009/09/15.  If you're having problems with hyperref, make sure you have this version or a more recent one before submitting a bug report.
+
+\section{hyperref}
+The hyperref package can be used to create many links within your document, making the digital copy easier to navigate.  When links are created in the document, they can be highlighted in a variety of ways: colored boxes around the text, colored text, and small capitals.  While these are necessary indicators of the presence of the link in an electronic document, they should not appear in the printed copy.  As a result, you are advised to turn hyperref (comment out the load command) when typesetting the file for printing purposes.  When you go back to typesetting with hyperlinks, you are likely going to need to trash the auxilarly (aux, toc, lof, lot, etc.) files to get the document to typeset correctly.
+
+The class file was tested with v6.80n, last revised 2010/03/11.  If you're having problems with hyperref, make sure you have this version or a more recent one before submitting a bug report.
+
+\section{hyperref and ifthen}
+If a user defined command that calls the commands from the ifthen package (like \verb=\equal=) is placed inside a sectioning command, this is likely to raise a problem if hyperref is also being used, even if the user defined command is robust or protected.  I have been unable to identify exactly what causes this error and can provide no fix.  My only suggestion is to redefine your command so that it uses the \TeX\ primitive if statements instead of the ifthen package.
+
+This bug was observed with v6.80n, last revised 2010/03/11, of hyperref and v1.1c, last revised 2001/05/26, of ifthen.
+
+\section{soul}
+The class file uses this package for the \verb=\highlight= command.  As a result, any attempt to load this package with options by using \verb=\usepackage= will result in an option clash error.  Instead, pass whatever options for soul you want to the class file and they will automatically be passed along to soul when it is loaded.
+
+The class file was tested with v2.4, last revised 2003/11/17.  If you're having problems with soul, make sure you have this version or a more recent one before submitting a bug report.
+
+\section{tocvsec2}
+The class file uses this package to control the table of contents depth.  In particular, it is used to prevent preface sections from being numbered and appearing in the table of contents and to prevent appendix sections from appearing in the table of contents while still being numbered.  If you need to use this package for some other purpose, you don't need to reload it.
+
+The class file was tested with v1.2b, last revised 2010/02/27.  If you're having problems with tocvsec2, make sure you have this version or a more recent one before submitting a bug report.
+
+\section{hyphenat}
+The class file uses this package to turn off hyphenation for the entire document.  As a result, any attempt to load this package with options by using \verb=\usepackage= will result in an option clash error.  Since the only options for this package either disable all hyphenation (the option being used by the class file) or enable it for monospaced (typewriter-style) fonts which aren't allowed in a thesis (the graduate school wants a single font used throughout the document), you shouldn't have to load this package anyway.
+
+The class file was tested with 2009/09/02 v2.3c.  If you're having problems with hyphenat, make sure you have this version or a more recent one before submitting a bug report.
+\endinput

Documentation/AppB.aux

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+\relax 
+\providecommand\hyper@newdestlabel[2]{}
+\@writefile{toc}{\contentsline {chapter}{APPENDIX B -- \MakeUppercase  {Change Log}}{46}{appendix.B}}
+\@writefile{toc2}{\contentsline {chapter}{APPENDIX B -- \MakeUppercase  {Change Log}}{46}{appendix.B}}
+\@writefile{toc}{\addvspace {6\p@ }}
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+\@writefile{lof2}{\addvspace {10\p@ }}
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+\@writefile{toc2}{\contentsline {section}{\numberline {B.5} Changes between v1 and v1.1}{49}{section.B.5}}
+\@setckpt{AppB}{
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+}

Documentation/AppB.tex

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+% !TEX root =  Main.tex
+\chapter{Change Log}
+Changes in Bold were required by the Graduate School
+
+\section{Changes since v1.7}
+\begin{itemize}
+\item{\textbf{Hyphenation disabled.}}
+\item{\textbf{Full justification disabled.}}
+\end{itemize}
+
+\section{Changes since v1.6}
+\begin{itemize}
+\item{Added \verb=\highlight= command.}
+\item{Modifications to \verb=\pocket= to make its ToC entries match other chapter-level entries.}
+\item{Added two-volume support.}
+\item{Made some modifications to help with widow/orphan control in the ToC.}
+\end{itemize}
+
+\section{Changes since v1.5}
+\begin{itemize}
+\item{\textbf{Changed line length for multiple line entires in the ToC.}}
+\item{\textbf{Removed the multiple appendices ``Appendices'' header from the ToC.}}
+\item{Added twoside option.}
+\item{Added unbound option.}
+\item{Added hooks to alter heading styles.}
+\item{Added chicago and apa option to switch headings automatically to the appropriate style.}
+\end{itemize}
+
+\section{Changes since v1.1}
+\begin{itemize}
+\item{License Changed to LPPL v1.3c.}
+\item{Generalized Dissertation Acceptance Page.}
+\item{Changed to signature line on Library Rights Page.}
+\item{Fixed delimiter in figure and table captions.}
+\item{Unified \verb=\copyrightyear{...}= and \verb=\copyrightpage= into single command.}
+\item{Refined support for two advisors and number of committee members.}
+\item{Removed support for External Reader on title page.}
+\item{Created patch code to fix list of tables and list of figures when hyperref is used.}
+\item{Added layabstract environment.}
+\item{Added listof environment.}
+\item{Changed font for verbatim environment and \verb=\verb= command.}
+\item{Fixed typesetting of dedication.}
+\item{General file maintenance.}
+\item{Added insertion of ``Appendices'' to ToC when there are multiple appendices.}
+\item{Modified biography environment to auto-generate the last sentence.}
+\item{Made identification of number of advisors and committee members automatic.}
+\item{Removed \verb=\appsection{...}= as it is redundant with \verb=\section*{...}=.}
+\item{Changed way ``Chapters'' and ``Appendices'' are added to the TOC.}
+\item{Added tocvsec2 dependance to make the change in TOC depth for the front matter and appendices automatic.}
+\item{Modified preface environment to make the non-numbering of its sections, subsections, etc automatic.}
+\item{Reserved \verb=\part= for multiple volume support.}
+\item{Added \verb=\pocket=.}
+\item{Defined a pseudo \verb=\texorpdfstring= command for use in chapter titles.  When hyperref is loaded (and defines the command properly) this has the effect of hiding \verb=\MakeUppercase= commands from hyperref.}
+\item{Made Preface, Dedication, and Acknowledgements double spaced.}
+\item{Created type variables and commands that allows switching to ``thesis'' or ``project'' instead of ``dissertation.''}
+\item{Removed footnote rule.}
+\item{Renamed \verb=\labelchaptersintoc= to \verb=\toclabel=, generalized its function, and made it compatible with hyperref.}
+\item{Added commands to compress title page when needed.}
+\end{itemize}
+
+\section{Changes between v1 and v1.1}
+This list is not entirely complete but is a best reconstruction as I can manage.  Changes were not logged prior to v1.5.
+\begin{itemize}
+\item{Added Dissertation Acceptance Page}
+\item{Added support for 6 member committees}
+\item{Removed Boldface from TOC entries}
+\item{Reduced size of chapter and section headers to match text font, both in place and TOC entries}
+\item{Added support for two advisors}
+
+\end{itemize}
+
+\endinput

Documentation/Biography.aux

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+\relax 
+\providecommand\hyper@newdestlabel[2]{}
+\@writefile{toc}{\nopagebreak }
+\@writefile{toc}{\contentsline {chapter}{BIOGRAPHY OF THE AUTHOR}{50}{appendix*.18}}
+\@writefile{toc2}{\nopagebreak }
+\@writefile{toc2}{\contentsline {chapter}{BIOGRAPHY OF THE AUTHOR}{50}{appendix*.18}}
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Documentation/Biography.tex

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+% !TEX root =  Main.tex
+\begin{biography}
+<Your biography appears here.  See Section \ref{bio} for details>
+\end{biography}
+\endinput