Initial Mod Commit

* Basic infrastructure
* Twilight Forest
  - added support for versions later than 3.8.689
  - Transformation Trees now change the biome they're in to Enchanted Forest as expected
* AbyssalCraft
  - Support for versions of AbyssalCraft later than 1.9.6
  - AbyssalCraft is able to change biomes through ritual or corruption
* Bookshelf
  - Added support for mods that use DarkHax's Bookshelf mod
  - WorldUtils#setBiomes correctly alters the biome in worlds with JEID installed
  - This fixes Moss being unable to alter the biome in the Hunting Dimension

.gitignore

@@ -0,0 +1,20 @@
+# IntelliJ project files
+.idea
+*.iml
+out
+
+# Gradle files
+.gradle
+
+# Minecraft files
+run
+
+# Project Build files
+build
+
+# Compiled jars
+*.jar
+!gradle/wrapper/gradle-wrapper.jar
+
+# System files
+*.DS_Store

.travis.yml

@@ -0,0 +1,30 @@
+language: java
+jdk: oraclejdk8
+
+before_cache:
+  - rm -f $HOME/.gradle/caches/modules-2/modules-2.lock
+  - rm -rf $HOME/.gradle/caches/*/plugin-resolution/
+  - rm -f $HOME/.gradle/caches/minecraft/ForgeVersion.json
+  - rm -f $HOME/.gradle/caches/minecraft/ForgeVersion.json.etag
+  - rm -rf  $HOME/.gradle/caches/minecraft/deobfedDeps
+  - rm -f $HOME/.gradle/caches/*/fileHashes/fileHashes.bin
+  - rm -f $HOME/.gradle/caches/*/fileHashes/fileHashes.lock
+
+cache:
+  directories:
+  - "$HOME/.gradle/caches"
+  - "$HOME/.gradle/wrapper"
+  - "$HOME/.m2/repository"
+
+install: "./gradlew setupCIWorkspace"
+script: "./gradlew clean build"
+
+deploy:
+  provider: releases
+  skip_cleanup: true
+  api_key:
+    secure: w7hJ6+wtexnkItn4rJUinxTSTFhzINv62kcl4I+oLId27P6YVnoB3QV6eutQlYT1hmHNJFcSeG8F4K2Q7I/K6LIzwQHvrZaMU170tV+3BKzlYHa9DUU0AqZtfJjP89jtdWFkxODfakaWJgJBswwwMcwp9Uq2WGJVSAE4aI+TOiwUqxjkXjm6j14Kl9Q8f2blxXlHWfPT/DE3fmSguuT961JE33DwloCaAi5nNHkq+LJLycvG3wI29urCzePdgsIhbweL7+cDUTT0POyorCT/XjrTQT8DGAmnNNzyyV9qnyg5tHFbezhqRm4Yu/vcXHN/8GSYFQwyKREI3r+603ngnziCmgCooRShyZqLKKa2c21P2eOeE9y5W3iCOmmB+jGcGjrPkImSXdb/PymqWfrvq9PNmP7IJy88TjQYBt8ftaZXBF4XC2vVTls4XLJJ3e1CNzj6fpmgRdJ2jb065K2YJ714I9H6w2a4GirzIXq+9EzYNlDV9lcux9E/7GvP16ow7S+n5ZFiwwk6ChBvHu5HIYsAO/30qao3984+EAmXvyeKfN4fVbX4oJsK523aFQOkV+E9qNkH/57LgwKVmrgrWqDLwXfUiiV89V7JBeDCaYlBZviVumT34w2Ndncp4Q00mMMvLxHS26swuNZBwpaimGWqD57OOrY41QhBivWYU0E=
+  file_glob: true
+  file: $TRAVIS_BUILD_DIR/build/libs/*
+  on:
+    tags: true

build.gradle

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+buildscript {
+    repositories {
+        jcenter()
+        maven { url 'https://files.minecraftforge.net/maven' }
+        maven { url 'http://repo.spongepowered.org/maven' }
+    }
+    dependencies {
+        classpath 'net.minecraftforge.gradle:ForgeGradle:2.3-SNAPSHOT'
+        classpath 'org.spongepowered:mixingradle:0.6-SNAPSHOT'
+    }
+}
+apply plugin: 'net.minecraftforge.gradle.forge'
+apply plugin: 'org.spongepowered.mixin'
+
+def buildnumber = System.getenv('TRAVIS_BUILD_NUMBER')
+def suffix = buildnumber != null ? ".$buildnumber" : "-SNAPSHOT"
+version = "1.0.0$suffix"
+group = "uk.bobbytables.jeidsi" // http://maven.apache.org/guides/mini/guide-naming-conventions.html
+archivesBaseName = "jeidsi"
+
+sourceCompatibility = targetCompatibility = '1.8' // Need this here so eclipse task generates correctly.
+compileJava {
+    sourceCompatibility = targetCompatibility = '1.8'
+}
+
+minecraft {
+    version "1.12.2-14.23.5.2815"
+    runDir "run"
+    mappings "stable_39"
+    makeObfSourceJar false // an Srg named sources jar is made by default. uncomment this to disable.
+
+    def args = [
+            '-Dfml.coreMods.load=uk.bobbytables.jeidsi.JEIDsILoadingPlugin',
+            '-Dmixin.hotSwap=true',
+            '-Dmixin.checks.interfaces=true'
+    ]
+    clientJvmArgs.addAll(args)
+    serverJvmArgs.addAll(args)
+}
+
+repositories {
+    mavenLocal()
+
+    maven { url 'https://www.dimdev.org/maven'}
+
+    ivy {
+        url 'https://google.com/404'
+        ivyPattern('https://google.com/404')
+        artifactPattern("https://media.forgecdn.net/files/[organisation]/[module]/[revision].[ext]")
+    }
+}
+
+dependencies {
+    compileOnly 'org.dimdev:mixin:0.7.11-SNAPSHOT'
+    compileOnly '2626:479:JustEnoughIDs-1.0.2-26@jar'
+
+    compileOnly '2691:339:AbyssalCraft-1.12.2-1.9.6@jar'
+    compileOnly '2683:823:Bookshelf-1.12.2-2.3.577@jar'
+    compileOnly "2686:476:twilightforest-1.12.2-3.9.888-universal@jar"
+}
+
+mixin {
+    add sourceSets.main, "mixins.jeidsi.refmap.json"
+}
+
+jar {
+    manifest.attributes(
+            "FMLCorePluginContainsFMLMod": "true",
+            "TweakClass": "org.spongepowered.asm.launch.MixinTweaker",
+            "FMLCorePlugin": "uk.bobbytables.jeidsi.JEIDsILoadingPlugin",
+            "ForceLoadAsMod": "true"
+    )
+}
+
+processResources {
+    // this will ensure that this task is redone when the versions change.
+    inputs.property "version", project.version
+    inputs.property "mcversion", project.minecraft.version
+
+    // replace stuff in mcmod.info, nothing else
+    from(sourceSets.main.resources.srcDirs) {
+        include 'mcmod.info'
+
+        // replace version and mcversion
+        expand 'version':project.version, 'mcversion':project.minecraft.version
+    }
+
+    // copy everything else except the mcmod.info
+    from(sourceSets.main.resources.srcDirs) {
+        exclude 'mcmod.info'
+    }
+}

gradle.properties

@@ -0,0 +1,3 @@
+# Sets default memory used for gradle commands. Can be overridden by user or command line properties.
+# This is required to provide enough memory for the Minecraft decompilation process.
+org.gradle.jvmargs=-Xmx3G

gradle/wrapper/gradle-wrapper.properties

@@ -0,0 +1,6 @@
+#Mon Sep 14 12:28:28 PDT 2015
+distributionBase=GRADLE_USER_HOME
+distributionPath=wrapper/dists
+zipStoreBase=GRADLE_USER_HOME
+zipStorePath=wrapper/dists
+distributionUrl=https\://services.gradle.org/distributions/gradle-4.9-bin.zip

gradlew

@@ -0,0 +1,164 @@
+#!/usr/bin/env bash
+
+##############################################################################
+##
+##  Gradle start up script for UN*X
+##
+##############################################################################
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS=""
+
+APP_NAME="Gradle"
+APP_BASE_NAME=`basename "$0"`
+
+# Use the maximum available, or set MAX_FD != -1 to use that value.
+MAX_FD="maximum"
+
+warn ( ) {
+    echo "$*"
+}
+
+die ( ) {
+    echo
+    echo "$*"
+    echo
+    exit 1
+}
+
+# OS specific support (must be 'true' or 'false').
+cygwin=false
+msys=false
+darwin=false
+case "`uname`" in
+  CYGWIN* )
+    cygwin=true
+    ;;
+  Darwin* )
+    darwin=true
+    ;;
+  MINGW* )
+    msys=true
+    ;;
+esac
+
+# For Cygwin, ensure paths are in UNIX format before anything is touched.
+if $cygwin ; then
+    [ -n "$JAVA_HOME" ] && JAVA_HOME=`cygpath --unix "$JAVA_HOME"`
+fi
+
+# Attempt to set APP_HOME
+# Resolve links: $0 may be a link
+PRG="$0"
+# Need this for relative symlinks.
+while [ -h "$PRG" ] ; do
+    ls=`ls -ld "$PRG"`
+    link=`expr "$ls" : '.*-> \(.*\)$'`
+    if expr "$link" : '/.*' > /dev/null; then
+        PRG="$link"
+    else
+        PRG=`dirname "$PRG"`"/$link"
+    fi
+done
+SAVED="`pwd`"
+cd "`dirname \"$PRG\"`/" >&-
+APP_HOME="`pwd -P`"
+cd "$SAVED" >&-
+
+CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
+
+# Determine the Java command to use to start the JVM.
+if [ -n "$JAVA_HOME" ] ; then
+    if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
+        # IBM's JDK on AIX uses strange locations for the executables
+        JAVACMD="$JAVA_HOME/jre/sh/java"
+    else
+        JAVACMD="$JAVA_HOME/bin/java"
+    fi
+    if [ ! -x "$JAVACMD" ] ; then
+        die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+    fi
+else
+    JAVACMD="java"
+    which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+fi
+
+# Increase the maximum file descriptors if we can.
+if [ "$cygwin" = "false" -a "$darwin" = "false" ] ; then
+    MAX_FD_LIMIT=`ulimit -H -n`
+    if [ $? -eq 0 ] ; then
+        if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then
+            MAX_FD="$MAX_FD_LIMIT"
+        fi
+        ulimit -n $MAX_FD
+        if [ $? -ne 0 ] ; then
+            warn "Could not set maximum file descriptor limit: $MAX_FD"
+        fi
+    else
+        warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT"
+    fi
+fi
+
+# For Darwin, add options to specify how the application appears in the dock
+if $darwin; then
+    GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
+fi
+
+# For Cygwin, switch paths to Windows format before running java
+if $cygwin ; then
+    APP_HOME=`cygpath --path --mixed "$APP_HOME"`
+    CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
+
+    # We build the pattern for arguments to be converted via cygpath
+    ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`
+    SEP=""
+    for dir in $ROOTDIRSRAW ; do
+        ROOTDIRS="$ROOTDIRS$SEP$dir"
+        SEP="|"
+    done
+    OURCYGPATTERN="(^($ROOTDIRS))"
+    # Add a user-defined pattern to the cygpath arguments
+    if [ "$GRADLE_CYGPATTERN" != "" ] ; then
+        OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)"
+    fi
+    # Now convert the arguments - kludge to limit ourselves to /bin/sh
+    i=0
+    for arg in "$@" ; do
+        CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
+        CHECK2=`echo "$arg"|egrep -c "^-"`                                 ### Determine if an option
+
+        if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then                    ### Added a condition
+            eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
+        else
+            eval `echo args$i`="\"$arg\""
+        fi
+        i=$((i+1))
+    done
+    case $i in
+        (0) set -- ;;
+        (1) set -- "$args0" ;;
+        (2) set -- "$args0" "$args1" ;;
+        (3) set -- "$args0" "$args1" "$args2" ;;
+        (4) set -- "$args0" "$args1" "$args2" "$args3" ;;
+        (5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
+        (6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
+        (7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
+        (8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
+        (9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
+    esac
+fi
+
+# Split up the JVM_OPTS And GRADLE_OPTS values into an array, following the shell quoting and substitution rules
+function splitJvmOpts() {
+    JVM_OPTS=("$@")
+}
+eval splitJvmOpts $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS
+JVM_OPTS[${#JVM_OPTS[*]}]="-Dorg.gradle.appname=$APP_BASE_NAME"
+
+exec "$JAVACMD" "${JVM_OPTS[@]}" -classpath "$CLASSPATH" org.gradle.wrapper.GradleWrapperMain "$@"

src/main/java/uk/bobbytables/jeidsi/JEIDsI.java

@@ -0,0 +1,14 @@
+package uk.bobbytables.jeidsi;
+
+import net.minecraftforge.fml.common.Mod;
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
+
+@Mod(modid = JEIDsI.MODID, name = JEIDsI.NAME, version = JEIDsI.VERSION, dependencies = "required-after:jeid")
+public class JEIDsI {
+    public static final String MODID = "jeidsi";
+    public static final String NAME = "JustEnoughIDs Integration";
+    public static final String VERSION = "1.0.0";
+
+    public static final Logger LOGGER = LogManager.getLogger("JEIDsI");
+}

src/main/java/uk/bobbytables/jeidsi/JEIDsILoadingPlugin.java

@@ -0,0 +1,49 @@
+package uk.bobbytables.jeidsi;
+
+import net.minecraftforge.common.ForgeVersion;
+import net.minecraftforge.fml.relauncher.IFMLLoadingPlugin;
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
+import org.spongepowered.asm.launch.MixinBootstrap;
+import org.spongepowered.asm.mixin.Mixins;
+
+import javax.annotation.Nullable;
+import java.util.Map;
+
+@IFMLLoadingPlugin.MCVersion(ForgeVersion.mcVersion)
+@IFMLLoadingPlugin.SortingIndex(-8000)
+public class JEIDsILoadingPlugin implements IFMLLoadingPlugin {
+    public static final Logger LOGGER = LogManager.getLogger("jeidsi");
+
+    public JEIDsILoadingPlugin() {
+        MixinBootstrap.init();
+        Mixins.addConfiguration("mixins.jeidsi.init.json");
+        Mixins.addConfiguration("mixins.jeid.server.init.json"); // We NEED JEID's loader plugin on the server too
+    }
+
+    @Override
+    public String[] getASMTransformerClass() {
+        return new String[0];
+    }
+
+    @Override
+    public String getModContainerClass() {
+        return null;
+    }
+
+    @Nullable
+    @Override
+    public String getSetupClass() {
+        return null;
+    }
+
+    @Override
+    public void injectData(Map<String, Object> data) {
+
+    }
+
+    @Override
+    public String getAccessTransformerClass() {
+        return null;
+    }
+}