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adding @charles-cowart suggestions
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README.rst

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@@ -6,9 +6,9 @@ This plugin provides the following commands:
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#. Sequence Processing Pipeline (SPP):
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This command converts the BCL to FASTQ files, does adaptor and host/human sequence filtering, summarizes results and uploads the resulting files to Qiita as a new preparation and artifact. This command is based on [mg-scripts](https://github.com/biocore/mg-scripts) and (metapool)[https://github.com/biocore/metagenomics_pooling_notebook/].
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This command converts the BCL to FASTQ files, does adaptor and host/human sequence filtering, summarizes results and uploads the resulting files to Qiita as one or more new preparations and artifacts. This command is based on [mg-scripts](https://github.com/biocore/mg-scripts) and (metapool)[https://github.com/biocore/metagenomics_pooling_notebook/].
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When the SPP adds a new preparation it adds some extra columns to that preparation:
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The new preparations that the SPP adds contain some automatically generated extra columns:
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* raw_reads_r1r2: this is the total number of reads that the sequencing generated for R1 and R2.
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