2023.10

• Added a new notebooks folder to the repository to allocate the resource-allocation code and plotting.
• Allowed dynamic resource allocations for time (before it was only for memory), and allowed complex formulas (via eval).
• Deployed the new resource allocation formulas. This included changes on how the ProcesingJob.shape method calculates its variables, which include: (a) build_analysis_files: only use the biom file (vs. all of them); and (b) the SPP counts the input-file number of lines know the number of samples.
• qp-woltka generates a new file: coverates.tgz, which contains: (a) artifact.cov: the coverages of this artifact, can be used with other coverages to generate combined coverages; (b) coverage_percentage.txt: the total percentage coverage per-genome of this artifact; and (c) coverages folder: the per-sample coverage.
• The SPP now supports replicates within the same lane/run and creates multiple preparations as needed.
• The SPP automatically adds and executes the default pipeline after it is done generating and linking the raw data.
• Other fixes: #3300, metapool #135, metapool #136, qtp-sequencing #47.