scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

plotthis is an R package that is built upon ggplot2 and other plotting packages.

A pipeline framework for python

Report generation system for pipen

An R package for enrichment (over-representation) analysis of gene sets.

The pandas backend for datar

The numpy backend for datar.

A Grammar of Data Manipulation in python

Add verbosal information in logs for pipen.

Recipes for conda packages

Python dictionary with dot notation

Command line argument parser for pipen

A job management system for python

A Python CLI that wraps common Linux commands for both local and cloud files

yunpath is a Python library that extends the pathlib library to support cloud storage services.

Generate running information for jobs in pipen pipelines.

A set of processes/pipelines for bioinformatics

Prism themes for plotnine, inspired by ggprism.

Integrative analysis for scTCR- and scRNA-seq data

Add a set of useful filters for pipen templates.

A port of liquid template engine for python

Visualizing configuration and running of pipen pipelines on the web

A pipen CLI plugin to create a pipen project (pipeline)

A pipen cli plugin to run a process or a pipeline

Save running logs to file for pipen

Make reference documentation for processes

Checking the requirements for processes of a pipeline

A plugin for pipen to handle files in Google Cloud Storage

Dry runner for pipen