added ansible installer

ansible_installer/README.md

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+# INSTALL
+
+ansible-playbook -i hosts install.yml

ansible_installer/config_vars.yml

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+---
+
+app_location: ~/test_ansible/Applications
+data_location: ~/test_ansible/Data
+uniref_db: uniref90
+#uniref_db: uniref50

ansible_installer/hosts

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+[all]
+localhost

ansible_installer/install.yml

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+- name: Install dompred
+  hosts: all
+  roles:
+    - blast
+    - dompred
+  vars_files:
+   - ./config_vars.yml

ansible_installer/roles/blast/tasks/main.yml

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+---
+  - name: Check if we the psiblast is installed
+    stat: path={{ app_location }}/blast-2.2.26/bin/blastpgp
+    register: blastpgp_exist
+
+  - name: Download BLAST+ tarball
+    when: blastpgp_exist.stat.exists == False
+    get_url:
+      url: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy.NOTSUPPORTED/2.2.26/blast-2.2.26-x64-linux.tar.gz
+      dest: "{{ app_location }}/"
+      timeout: 120
+    register: get_url_result
+
+  - name: unarchive blast
+    when: blastpgp_exist.stat.exists == False
+    unarchive:
+      src: "{{ app_location }}/blast-2.2.26-x64-linux.tar.gz"
+      dest: "{{ app_location }}/"
+      remote_src: yes
+
+  - name: remove blast+ tar.gz
+    when: blastpgp_exist.stat.exists == False
+    ansible.builtin.file:
+      state: absent
+      path: "{{ app_location }}/blast-2.2.26-x64-linux.tar.gz"
+
+  - name: Check if we have uniref db
+    stat:
+      path: "{{ data_location }}/uniref/{{ uniref_db }}.fasta"
+      get_md5: false
+      get_checksum: false
+    register: uniref_exist
+
+  - name: Make uniref dir
+    file:
+      path: "{{ data_location }}/uniref/"
+      mode: uog+rw
+      state: directory
+    when: uniref_exist.stat.exists == False
+
+  - name: Download uniref
+    when: uniref_exist.stat.exists == False
+    get_url:
+      url: ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/{{ uniref_db }}/{{ uniref_db }}.fasta.gz
+      dest: "{{ data_location }}/uniref/"
+      timeout: 120
+    register: get_url_result
+
+  - name: unzip uniref
+    shell: cd {{ data_location }}/uniref; /bin/gunzip {{ uniref_db }}.fasta.gz
+    when: uniref_exist.stat.exists == False
+
+  - name: Check if we have db formatted
+    stat:
+      path: "{{ data_location }}/uniref/{{ uniref_db }}.fasta.00.phr"
+      get_md5: false
+      get_checksum: false
+    register: formatdb_exist
+
+  - name: Run formatdb
+    shell: cd {{ data_location }}/uniref; {{ app_location }}/blast-2.2.26/bin/formatdb -i {{ uniref_db }}.fasta -p T
+    when: formatdb_exist.stat.exists == False

ansible_installer/roles/dompred/tasks/main.yml

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+---
+
+  - name: "install gnuplot"
+    dnf:
+      pkg: gnuplot
+      state: latest
+    become_user: root
+    become_method: sudo
+    become: true
+
+  - name: Check if dompred is present
+    stat: path={{ app_location }}/dompred/parseDS.pl
+    register: dompred_exist
+
+  - name : Check Out dompred from git
+    when: dompred_exist.stat.exists == False
+    git:
+      repo: https://github.com/psipred/dompred.git
+      dest: "{{ app_location }}/dompred"
+      clone: yes
+      force: yes
+
+  - name: Download data files
+    when: dompred_exist.stat.exists == False
+    get_url:
+      url: http://bioinfadmin.cs.ucl.ac.uk/downloads/dompred_data/dompred_data.tar.gz
+      dest: "{{ app_location }}/dompred/"
+      timeout: 120
+    register: get_url_result
+
+  - name: untar dompred data
+    when: dompred_exist.stat.exists == False
+    unarchive:
+      src: "{{ app_location }}/dompred/dompred_data.tar.gz"
+      dest: "{{ app_location }}/dompred/"
+      remote_src: yes
+
+  - name: remove tar.gz
+    when: dompred_exist.stat.exists == False
+    ansible.builtin.file:
+      state: absent
+      path: "{{ app_location }}/dompred/dompred_data.tar.gz"
+
+  - name: compile DomSSEA
+    when: dompred_exist.stat.exists == False
+    shell: cd {{ app_location }}/dompred/src; javac DomSSEA.java
+
+  # - name: update blast location
+  #   ansible.builtin.lineinfile:
+  #     path:  "{{ app_location }}/dompred/"
+  #     regexp: "^my .ncbidir ="
+  #     line: "my $ncbidir = '{{ app_location}}/blast-2.2.26/bin';"
+
+  # - name: update blastdb location
+  #   ansible.builtin.lineinfile:
+  #     path:  "{{ app_location }}/dompred/"
+  #     regexp: "^my .dbname ="
+  #     line: "my $dbname = '{{ data_location }}/uniref/uniref50.fasta';"