Create 2022_Changmai_Cambodia.janno

[scarlhoff]

.janno file for future use.

Changmai et al.	Sci Rep	Ancient DNA from Protohistoric Period Cambodia indicates that South Asians admixed with local populations as early as 1st–3rd centuries CE	2022	https://www.nature.com/articles/s41598-022-26799-3

[stschiff]

Thanks a lot @scarlhoff. We'll take a look!

[nevrome]

Thanks for preparing this .janno file! I see no issues.

Maybe you could remove all columns that are completely empty/filled only with n/a, but beyond that it's all good, I think.

[stschiff]

@TCLamnidis will reach out to Piya to ask him for the genotype data... unless it's by David's lab, in which case we can copy from AADR.

[TCLamnidis]

Piya confirmed via email that the exact genotypes should be available on the AADR, and also noted that data for the same individual have been previously published as part of Lipson et al. 2018. This paper adds sequencing data from 2 libraries to increase coverage.

[stschiff]

OK we discussed yesterday that we will pull in the Genotype data from the AADR in this case, as the data was in fact generated in the Reich lab. Any volunteers to do this?

[stschiff]

@scarlhoff do you think you could possibly contribute here and extract the genotype data from AADR to add to this package? It might be worth coordinating with @nevrome regarding an updated version of our Poseidon-AADR archive. If you can't, that's fine, then we'll find someone else.

[stschiff]

@nevrome I think @scarlhoff was on this. Was it your intention to close this PR, or was this an accident?

[stschiff]

OK, now that it's open again: @scarlhoff did I recall correctly that you volunteered to try and get the author-provided genotype data for this package? I think it's basically the one in the AADR, so it's just about extracting it and adding it to this package.

[scarlhoff]

@stschiff I have the package ready, just haven't had time yet to upload to the repository. I'm happy to send the path to someone if it's urgent