Update piranha.yml

polio-nanopore · Jan 31, 2025 · 61f65c2 · 61f65c2
1 parent 1a62c7e
commit 61f65c2
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/.github/workflows/piranha.yml b/.github/workflows/piranha.yml
@@ -26,6 +26,8 @@ jobs:
         run: piranha --version
       - name: Run piranha with test data
         run: piranha -i piranha/test/pak_run/demultiplexed --verbose -b piranha/test/pak_run/barcodes01.csv -t 2 2>&1 | tee piranha.log
+      - name: Run piranha with minimap2 option
+        run: piranha -i piranha/test/pak_run/demultiplexed --verbose -b piranha/test/pak_run/barcodes01.csv -mo x=map-ont k=8 -t 2 2>&1 | tee piranha.log
       - name: Run piranha in phylo mode
         run: piranha -i piranha/test/pak_run/demultiplexed --verbose -b piranha/test/pak_run/barcodes.csv -t 2 -rp -ud -sd piranha/test/supp_data 2>&1 | tee piranha_phylo.log
       - name: Run piranha in haplo mode