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make ASVs to close #18#21

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colinbrislawn wants to merge 22 commits intomasterpnnl/hundo:masterfrom unoisepnnl/hundo:unoiseCopy head branch name to clipboard

+899-159

Commits

Commits on Apr 27, 2019

• Add click option --pipeline

  colinbrislawn

  committed
  1a4fa51

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• Add basic ASV pipeline

  colinbrislawn

  committed
  4ba7af2

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• bump version

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  35cd461

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• bump minor version, not patch version

  colinbrislawn

  committed
  f807168

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• Add pipline more places

  colinbrislawn

  committed
  3ea993c

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• Correct order of pipeline and add it more places

  colinbrislawn

  committed
  fabdd9a

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• Bump vsearch version to support --unoise

  colinbrislawn

  committed
  93eb5ab

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• Bump to more flexible version of vsearch and update Snakefile

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  committed
  4db5129

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Commits on Apr 28, 2019

• Remove extra --strand argument

  colinbrislawn

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  ac52599

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Commits on Apr 29, 2019

• Use --relabel_md5 when building ASVs

  colinbrislawn

  committed
  0a81c9f

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Commits on May 28, 2019

• compile_counts using .99 instead of 1.0

  colinbrislawn

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  82ce59a

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• use ASV or OTU in full Snakefile'

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  committed
  9af03f3

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• duplicate report for ASVs

  colinbrislawn

  committed
  733d55d

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• update new report to discribe ASVs

  colinbrislawn

  committed
  895c307

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• switch report based on config.get("pipeline")

  colinbrislawn

  committed
  e00131a

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• strip size from ASV headers

  colinbrislawn

  committed
  0c717f5

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• bump vsearch to include gzip support

  colinbrislawn

  committed
  47423f5

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• troubleshoot results.zip and build_report

  colinbrislawn

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  5d6e212

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Commits on May 29, 2019

• update manifest to include reports

  colinbrislawn

  committed
  f3506d3

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Commits on Mar 18, 2024

• Merge branch 'master' into unoise

  colinbrislawn

  authored
  6bae178

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• unpin bzip2 to updata vsearch

  colinbrislawn

  committed
  08392b8

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• Update zenodo.org download URL

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  committed
  3278382

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