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    195 repositories

    • molgenis-emx2

      Public
      MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
      Vue
      •
      GNU Lesser General Public License v3.0
      •19•15•264•65•Updated Feb 13, 2025Feb 13, 2025

    • ds-tidyverse-client

      Public
      R
      •1•1•1•0•Updated Feb 13, 2025Feb 13, 2025

    • molgenis-r-armadillo

      Public
      Client to manage shared files in the MOLGENIS Armadillo suite from R
      hacktoberfest
      R
      •5•3•7•1•Updated Feb 13, 2025Feb 13, 2025

    • ds-tidyverse

      Public
      R
      •2•2•0•1•Updated Feb 13, 2025Feb 13, 2025

    • vip

      Public
      Variant Interpretation Pipeline
      pipelinegeneticsvariant-interpretation
      Shell
      •
      GNU Lesser General Public License v3.0
      •6•23•7•8•Updated Feb 13, 2025Feb 13, 2025

    • straglr

      Public
      Fork of the version of the Straglr tool adapted by philres
      Python
      •
      Other
      •9•0•1•1•Updated Feb 13, 2025Feb 13, 2025

    • vip-annotate

      Public
      Variant Call Format (VCF) file annotation
      0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • vip-decision-tree

      Public
      Decision tree module for the Variant Interpretation Pipeline (vip)
      Java
      •
      GNU Lesser General Public License v3.0
      •0•3•0•5•Updated Feb 12, 2025Feb 12, 2025

    • molgenis-service-armadillo

      Public
      Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
      hacktoberfest
      Java
      •
      GNU Lesser General Public License v3.0
      •10•7•71•12•Updated Feb 11, 2025Feb 11, 2025

    • ReigenMT

      Public
      R implementation of eigenMT algorithm for multiple testing correction
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • vite-plugin-inline

      Public
      Vite plugin that embeds .js and .css as base85 data
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•10•0•2•Updated Feb 11, 2025Feb 11, 2025

    • vip-report-template

      Public
      Report template for Variant Call Format (VCF) Report generator
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•4•1•5•Updated Feb 11, 2025Feb 11, 2025

    • vip-report-api

      Public
      Report API for Variant Call Format (VCF) Report templates
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•2•0•2•Updated Feb 11, 2025Feb 11, 2025

    • vip-report-vcf

      Public
      TypeScript VCF library with support for both reading and writing
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•2•0•1•Updated Feb 11, 2025Feb 11, 2025

    • projects-solve-rd

      Public
      All things related to maintaining the RD3 database
      Python
      •
      GNU General Public License v3.0
      •3•1•0•2•Updated Feb 10, 2025Feb 10, 2025

    • vip-inheritance-matcher

      Public
      annotates VCF samples with denovo and possible compound flags and matching inheritance modes
      Java
      •
      GNU Lesser General Public License v3.0
      •0•5•1•1•Updated Feb 10, 2025Feb 10, 2025

    • ansible-pipelines

      Public
      Python
      •
      GNU General Public License v3.0
      •9•8•0•0•Updated Feb 7, 2025Feb 7, 2025

    • PGx-pipeline

      Public
      Farmacogenetics pipeline
      Shell
      •
      GNU Lesser General Public License v3.0
      •4•1•0•0•Updated Feb 6, 2025Feb 6, 2025

    • projects-rd-erns

      Public
      Python
      •0•0•1•2•Updated Feb 6, 2025Feb 6, 2025

    • vip-web

      Public
      Variant Interpretation Pipeline web interface
      Java
      •
      GNU Lesser General Public License v3.0
      •0•0•0•1•Updated Feb 4, 2025Feb 4, 2025

    • take-it-easyconfigs

      Public
      Perl
      •8•0•0•9•Updated Feb 3, 2025Feb 3, 2025

    • NGS_Automated

      Public
      Shell
      •
      GNU Lesser General Public License v3.0
      •8•4•13•1•Updated Jan 28, 2025Jan 28, 2025

    • sc-MetaBrain-consortium

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 26, 2025Jan 26, 2025

    • molgenis-tools-commander

      Public
      A command line interface for MOLGENIS
      hacktoberfest
      CSS
      •
      GNU Lesser General Public License v3.0
      •8•8•16•13•Updated Jan 25, 2025Jan 25, 2025

    • ds-admin-support

      Public
      Consented admin update tool for DataSHIELD servers (Armadillo/Opal)
      Vue
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • ngs-utils

      Public
      Collection of notes and scripts related to NGS
      Shell
      •
      GNU Lesser General Public License v3.0
      •22•14•2•0•Updated Jan 22, 2025Jan 22, 2025

    • molgenis.org

      Public
      Source code of the (new) website for MOLGENIS
      CSS
      •
      GNU Lesser General Public License v3.0
      •22•0•0•1•Updated Jan 15, 2025Jan 15, 2025

    • cluster-utils

      Public
      Collection of utilities / helper scripts to make life easier on our HPC clusters.
      Perl
      •
      GNU Lesser General Public License v3.0
      •9•22•0•0•Updated Jan 10, 2025Jan 10, 2025

    • projects-rd-recon4imd

      Public
      Python
      •
      GNU General Public License v3.0
      •2•0•0•3•Updated Jan 8, 2025Jan 8, 2025

    • vip-config-umcg-gd

      Public
      VIP configuration files for diagnostics
      HTML
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025