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    21 repositories

    • hashFrag

      Public
      A command-line tool to mitigate homology-based data leakage in sequence-to-expression models
      Jupyter Notebook
      •
      MIT License
      •0•8•3•0•Updated Jan 29, 2025Jan 29, 2025

    • Genomic-Model-Evaluation-API

      Public
      Python
      •1•6•0•0•Updated Jan 28, 2025Jan 28, 2025

    • random-promoter-dream-challenge-2022

      Public
      Python
      •
      MIT License
      •7•26•0•0•Updated Jan 27, 2025Jan 27, 2025

    • CAGT_meeting

      Public
      HTML
      •0•0•0•0•Updated Jan 26, 2025Jan 26, 2025

    • PlasmidLibraryCulture

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Jul 5, 2024Jul 5, 2024

    • synbio6-0.github.io

      Public
      HTML
      •0•0•0•0•Updated May 14, 2024May 14, 2024

    • MAUDE

      Public
      Mean Alterations Using Discrete Expression
      HTML
      •
      MIT License
      •4•14•2•0•Updated Apr 9, 2024Apr 9, 2024

    • RGP

      Public
      Python
      •0•1•0•0•Updated Jan 22, 2024Jan 22, 2024

    • across_bin_mod_starcode

      Public
      All pairs search and sequence clustering for binned cell sort fastq data
      C
      •
      GNU General Public License v3.0
      •21•0•0•0•Updated Aug 21, 2023Aug 21, 2023

    • CRM2.0

      Public
      Python
      •1•8•0•0•Updated May 3, 2023May 3, 2023

    • CisRegModels

      Public
      Scripts for building computational models of gene regulation with tensorflow
      Python
      •
      GNU General Public License v3.0
      •16•27•0•0•Updated May 3, 2023May 3, 2023

    • GIL

      Public
      Python
      •
      MIT License
      •3•14•0•0•Updated Mar 21, 2023Mar 21, 2023

    • DREAM-2022

      Public
      Python
      •2•3•0•0•Updated Jul 26, 2022Jul 26, 2022

    • SingleCellR

      Public
      Some functions that are useful for single cell RNA expression analysis in R
      R
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jul 29, 2021Jul 29, 2021

    • MCBANE

      Public
      MPRA Analysis
      R
      •
      MIT License
      •1•0•0•0•Updated Jan 21, 2021Jan 21, 2021

    • MPRAs

      Public
      Several python scripts to assist in MPRA analysis.
      Python
      •
      MIT License
      •0•5•0•0•Updated Feb 13, 2020Feb 13, 2020

    • VEP_GOMER

      Public
      VEP Plug-in for calculating differential TF binding to SNPs
      Perl
      •
      MIT License
      •0•2•0•0•Updated Aug 3, 2018Aug 3, 2018

    • Brockman

      Public
      Brockman Representation Of Chromatin by K-mers in Mark-Associated Nucleotides
      Shell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 2, 2018Apr 2, 2018

    • BrockmanR

      Public
      Brockman R package for analyzing k-mer representations of chromatin data
      R
      •
      GNU General Public License v3.0
      •2•0•1•0•Updated Mar 25, 2018Mar 25, 2018

    • GPRA_GA

      Public
      Genetic algorithms for GPRA
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 15, 2017Dec 15, 2017

    • UGER_tools

      Public
      Tools for efficiently using UGER
      Python
      •
      GNU General Public License v2.0
      •2•0•0•0•Updated Oct 6, 2017Oct 6, 2017